G65653


Basic Information

Item Value
gene id G65653
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21477586 ~ 21479712 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88628
aaataaacatattaaaaataagaacaaaatcaaagaaaaaatgcaatataataaaaaaaatacatgacacTTGCACATGTGTTATGTTTGTAATTTAAAGAATTCTTATTTTACAAGCCCTTTACCTATGATGGCGTTTTTGggtcattcttaaaaaaaatacaaatttctgTCGCTCCCACTCGCAATCCTAATAGGAATTGAATGAATTAAATTTAGTGCTTGGAatttacttatgtatttattaaaacagtaatgtaGCGCTGGATTAGCTGTCCCAACTTAGATCggacccaaaaaatccagcccgacccgGCCGAGCCTGTGCACATTCTGCAGCCCGCCCAGACCAATAACCTGTTCTATTTAAACATGACATTTTAGTAGTGCGTTAAACTGAACTTTTAAGAAACATTTTCAGggagtttgaatgagcgaaatctgttcagaattataCTATTTAACAttGCAAAcctaaagaagcatagacctattatttaataaaaatatttactaagAACCGACCCGGGGGAAATCTCTGCCCGAGATCAGGTCGGACATCGGGCAGTCAGGTGAATTGGAGATGCTAAAATATTcccatatgtatgtgtgtgtgtgtgtgtgtatgtcggTCCATTATCCTCCGCTTTGATATTTAGCAGtaatatctttttttgttttgtgcattggatattaacttaaaaacttatttttttctttgcagctTTCCTTGAGTTCCAATTGTGGGTCTGTTATACTCatgataattaatttatacacgtattaatatgccataccatatgtctgtttttgtttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88628 True 818 lncRNA 0.34 2 21477586 21479712

Neighbor

gene id symbol gene type direction distance location
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 39376 21410849 ~ 21438210 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 882285 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 979925 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 1079619 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 1211389 20262580 ~ 20266197 (+)
msgn1 NA coding downstream 235740 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 425547 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 453057 21932769 ~ 21956278 (+)
ptprr ptprr coding downstream 514398 21994110 ~ 22100636 (+)
LOC103042836 NA coding downstream 625128 22104840 ~ 22161850 (+)
G65638 NA non-coding upstream 49821 21421805 ~ 21427765 (+)
G65637 NA non-coding upstream 71742 21405635 ~ 21405844 (+)
G65634 NA non-coding upstream 93197 21378768 ~ 21384389 (+)
G65633 NA non-coding upstream 99810 21377246 ~ 21377776 (+)
G65630 NA non-coding upstream 105465 21371050 ~ 21372121 (+)
G65654 NA non-coding downstream 2147 21481859 ~ 21486886 (+)
G65658 NA non-coding downstream 16827 21496539 ~ 21498859 (+)
G65640 NA non-coding downstream 70993 21550705 ~ 21552600 (+)
G65672 NA non-coding downstream 88355 21568067 ~ 21569190 (+)
G65676 NA non-coding downstream 94339 21574051 ~ 21574272 (+)
G65575 nav3 other upstream 453012 21024175 ~ 21024574 (+)
G65565 NA other upstream 519951 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 1683261 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 2136707 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 2198069 19276802 ~ 19279517 (+)
gen1 gen1 other downstream 150075 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 1459843 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 1519658 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 1651368 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 1742802 23222514 ~ 23323361 (+)

Expression


Co-expression Network