G65744


Basic Information

Item Value
gene id G65744
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21588192 ~ 21588864 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88754
GGAAACAGTAAGTGAGAtttgataaattgtttaaggaaatagatgtattgttgataattgtgaaaagcaatctgcttggcattgtatatgcataaatacatattgaaaatattgaaaagtaaatgtaaagcatTGTTCGGATTTACTTGCTATAATAACGTGGACAAAGCACAGCATaacatctgtgtttattaatattgataatattattgtttgtaatggaacgattgatacagagaaaaataatcacGTTCCACTTATCCCAATTCTTaaagcactaaataaaatcaactaaatctaGAAATCAAGGCTTTATAAAAATCTTGGGAACTGAAtaaagtggcaggtaaaataatatagccaCAAGCGGTGATGCTAAAGTCCAAGCAAAAGtaacccaagaaagcccagTACATCAACATGGAACCATTCCTGACACAGAAGCCACATTATGTGTAGTTTGTGCAGAGTTTAAAACTTTGGGCCCTGATATTCTATCAATCAGTGTGGAGATGAATGGGAGAATAGAGCAGCTGATCATTAAAACTTTGCATGGAGCAATGATAATAAACATATAGGTTCAGGGTGGGTTGAGGCAATTCCTACCATTAAGGAGGATGCTCGC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006955 immune response biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0048884 neuromast development biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05150 Staphylococcus aureus infection
ko05310 Asthma

RNA

RNA id representative length rna type GC content exon number start site end site
TU88754 True 625 lncRNA 0.34 2 21588192 21588864

Neighbor

gene id symbol gene type direction distance location
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 149982 21410849 ~ 21438210 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 992891 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 1090531 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 1190225 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 1321995 20262580 ~ 20266197 (+)
msgn1 NA coding downstream 126588 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 316395 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 343905 21932769 ~ 21956278 (+)
ptprr ptprr coding downstream 405246 21994110 ~ 22100636 (+)
LOC103042836 NA coding downstream 515976 22104840 ~ 22161850 (+)
G65676 NA non-coding upstream 13920 21574051 ~ 21574272 (+)
G65672 NA non-coding upstream 19002 21568067 ~ 21569190 (+)
G65640 NA non-coding upstream 35592 21550705 ~ 21552600 (+)
G65658 NA non-coding upstream 89333 21496539 ~ 21498859 (+)
G65654 NA non-coding upstream 101306 21481859 ~ 21486886 (+)
G65752 NA non-coding downstream 10625 21599489 ~ 21599843 (+)
G65759 NA non-coding downstream 25843 21614707 ~ 21615121 (+)
G65764 NA non-coding downstream 56552 21645416 ~ 21645679 (+)
G65781 NA non-coding downstream 116471 21705335 ~ 21709756 (+)
G65827 NA non-coding downstream 183589 21772453 ~ 21772747 (+)
agbl5 NA other upstream 39030 21440409 ~ 21549162 (+)
G65575 nav3 other upstream 563618 21024175 ~ 21024574 (+)
G65565 NA other upstream 630557 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 1793867 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 2247313 19280292 ~ 19340879 (+)
gen1 gen1 other downstream 40923 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 1350691 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 1410506 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 1542216 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 1633650 23222514 ~ 23323361 (+)

Expression


Co-expression Network