G65781


Basic Information

Item Value
gene id G65781
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21705335 ~ 21709756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88800
CTGTAAATCACTGTATGTATTGTGGCAGCATTAGGAataacatttgtggaattatagtaaactacaaataaataagcatGCTACATTTTAGGGTTCAAGCTCAGAAGCTGCATAGAACACTGTTGTTTCTTCAAacaaatgatgttatgtaataacaaaagtttgggagaaggaccacgcccgaactctacgttctaactccaccccgtatcaatcaaccgtcctataaatacctcccctaactaactacctctcgtgacgaaaacttcgcaacccacctcctccccaacaaccccctttttctactcttccacttctcattaaataaaaagggggggatataactgcacgcttcttcagcacgcagttcagaactccagcccaaatttccccgagttccctccccttttcttcctccttttctacttctataaggcgtggtccgcacttagcaaattcttcttattattctttttccttTGAAAAAGCAGTTGTGTGGCCCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88800 True 505 lncRNA 0.42 2 21705335 21709756

Neighbor

gene id symbol gene type direction distance location
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 267125 21410849 ~ 21438210 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 1110034 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 1207674 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 1307368 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 1439138 20262580 ~ 20266197 (+)
msgn1 NA coding downstream 5696 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 195503 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 223013 21932769 ~ 21956278 (+)
ptprr ptprr coding downstream 284354 21994110 ~ 22100636 (+)
LOC103042836 NA coding downstream 395084 22104840 ~ 22161850 (+)
G65764 NA non-coding upstream 59656 21645416 ~ 21645679 (+)
G65759 NA non-coding upstream 90214 21614707 ~ 21615121 (+)
G65752 NA non-coding upstream 105492 21599489 ~ 21599843 (+)
G65744 NA non-coding upstream 116471 21588192 ~ 21588864 (+)
G65676 NA non-coding upstream 131063 21574051 ~ 21574272 (+)
G65827 NA non-coding downstream 62697 21772453 ~ 21772747 (+)
G65830 NA non-coding downstream 80829 21790585 ~ 21790944 (+)
G65831 NA non-coding downstream 95556 21805312 ~ 21806045 (+)
G65832 NA non-coding downstream 96408 21806164 ~ 21807211 (+)
G65834 NA non-coding downstream 101290 21811046 ~ 21811619 (+)
agbl5 NA other upstream 156173 21440409 ~ 21549162 (+)
G65575 nav3 other upstream 680761 21024175 ~ 21024574 (+)
G65565 NA other upstream 747700 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 1911010 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 2364456 19280292 ~ 19340879 (+)
ccdc167 NA other downstream 1229799 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 1289614 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 1421324 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 1512758 23222514 ~ 23323361 (+)
G66296 NA other downstream 1734418 23444174 ~ 23444677 (+)

Expression


Co-expression Network