G65803 (gen1)


Basic Information

Item Value
gene id G65803
gene name gen1
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21629958 ~ 21684828 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88823
GTATGTAATCACAGCCGAGGAGTACAGCTAGACCGACAAGTGTCTCTCGCTTCAGCTGAAGCTCAGTCTCCACTCTGGACATCTTATAACAGTCTATCTGAGGGTCCTTTGTGTTCATGTTGAAGTTTCTGTAGACAGTTTGAGCGCCGTATAGGAAAGCATctccatcactagtaatgcagCCATCCACCAAGCCCTGTGCATCCAAGAAGGCGCACATTGCCTCTGCTTCACCGGCTGCAGCTACCCACGGTACACCCAGACAGTCTAACATCTCAGCacaCTCTCGAAGGACTGCCTTAAAGCGCCCCCTGCCTGTGTTTGTGGTTTTTGCCTGTTTGGGACCACTCTCGGTTTTACCCCTACGGAATGCACCCTCAGTCCTCTTGCTTATAGTCTCTGCTTTGATTTTGGGGGCTTCTCCCTCCATTACAAACACAAGTTTTACCCCCATCCGAAGAAGAGATGACACACGAAAAAACAAATTGCGTAGATGAGGTTTTGTTACTCTGCCCATCATTGCTTGAACGTGTTGGGCTTCACAAATCCACAGACTTAGATCCACAGCTAGAGTCCTCCCAGTGAGACTGTACAATGGTACTGACTCTCGCACTGGATTCAGGATTGACCACAGTTCATTCACCCCCATGACTGAGAGCAAACAGCAAACTTTGTCTGTGATGTGAATCACGGAACACTCCTACAGGAGAT
>TU88824
GTATGTAATCACAGCCGAGGAGTACAGCTAGACCGACAAGTGTCTCTCGCTTCAGCTGAAGCTCAGTCTCCACTCTGGACATCTTATAACAGTCTATCTGAGGGTCCTTTGTGTTCATGTTGAAGTTTCTGTAGACAGTTTGAGCGCCGTATAGGAAAGCATctccatcactagtaatgcagCCATCCACCAAGCCCTGTGCATCCAAGAAGGCGCACATTGCCTCTGCTTCACCGGCTGCAGCTACCCACGGTACACCCAGACAGTCTAACATCTCAGCacaCTCTCGAAGGACTGCCTTAAAGCGCCCCCTGCCTGTGTTTGTGGTTTTTGCCTGTTTGGGACCACTCTCGGTTTTACCCCTACGGAATGCACCCTCAGTCCTCTTGCTTATAGTCTCTGCTTTGATTTTGGGGGCTTCTCCCTCCATTACAAACACAAGTTTTACCCCCATCCGAAGAAGAGATGACACACGAAAAAACAAATTGCGTAGATGAGGTTTTGTTACTCTGCCCATCATTGCTTGAACGTGTTGGGCTTCACAAATCCACAGACTTAGATCCACAGCTAGAGTCCTCCCAGTGAGACTGTACAATGGTACTGACTCTCGCACTGGATTCAGGATTGACCACAGTTCATTCACCCCCATGACTGAGAGCAAACAGCAAACTGtCTACACAAATATCCAC

Function

symbol description
gen1 Enables several functions, including endodeoxyribonuclease activity; magnesium ion binding activity; and protein homodimerization activity. Involved in DNA metabolic process and regulation of cell cycle process. Located in centrosome.

NR:

description
PREDICTED: flap endonuclease GEN homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88823 True 711 TUCP 0.49 5 21629958 21684828
TU88824 False 689 TUCP 0.49 5 21630121 21684828

Neighbor

gene id symbol gene type direction distance location
LOC103044186 NA coding downstream 243499 21374232 ~ 21386459 (-)
nav3 nav3 coding downstream 273450 20983152 ~ 21356508 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding downstream 819247 20522855 ~ 20810711 (-)
myf6 myf6 coding downstream 1424303 20202098 ~ 20205655 (-)
myf5 myf5,LOC107734855 coding downstream 1440257 20183094 ~ 20189701 (-)
mrps10 NA coding upstream 124457 21809285 ~ 21818148 (-)
LOC103040407 NA coding upstream 139068 21823896 ~ 21877702 (-)
LOC103040999 LOC103040999 coding upstream 281149 21965977 ~ 21970642 (-)
LOC111192879 NA coding upstream 304427 21989255 ~ 21990070 (-)
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding upstream 564059 22248887 ~ 22273098 (-)
G65802 NA non-coding downstream 2655 21626935 ~ 21627303 (-)
G65801 NA non-coding downstream 4279 21625480 ~ 21625679 (-)
G65799 NA non-coding downstream 17626 21612094 ~ 21612332 (-)
G65795 NA non-coding downstream 30259 21599489 ~ 21599699 (-)
G65791 NA non-coding downstream 40693 21588366 ~ 21589265 (-)
G65822 NA non-coding upstream 20645 21705473 ~ 21706659 (-)
G65815 NA non-coding upstream 29495 21714323 ~ 21716923 (-)
G65828 NA non-coding upstream 87617 21772445 ~ 21772740 (-)
G65925 NA non-coding upstream 144615 21829443 ~ 21830098 (-)
G65930 NA non-coding upstream 182327 21867155 ~ 21875310 (-)
ost4 NA other downstream 55759 21545418 ~ 21574199 (-)
llph llph other downstream 1830356 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 2024233 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2259250 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 2345926 19280302 ~ 19284032 (-)
G66081 bcap29 other upstream 605857 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1368445 23053273 ~ 23160179 (-)
G66619 NA other upstream 2823006 24507834 ~ 24508281 (-)
G66642 NA other upstream 2975196 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 3831687 25516515 ~ 25530980 (-)

Expression


Co-expression Network