G65815


Basic Information

Item Value
gene id G65815
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21714323 ~ 21716923 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88840
GCCATATAATTCCcacaatattaaacacacacatacgcgATTAGGTCAAATAAAAATGGACACAGTAATCAAGTGCCAGAAGGACTATATACACCAGAATTAAGACACAATAGTAGGCCAGTCAATAAAGTTCAAAATCTGTACAAACGGTGGCCAGCAGCGTTCATGTTTGGAGTCTGTTCTATCAGCTACAGTCAGTCTTGGTTGAGAATGTCCGACAGCTCCTTTATGTACTCGATGGTGTACTTCAGAGTCTGGATCTTGGTCAGTGGCTGTCCTTTGCGGCTGTAGACCGGGGGCAGGTAATCCCTCAGCTGGTGCAGAGCCTCCGCCAGACTCCTCATCCGCAGCTTCTCCCTCTCGCTGGCCTTCATGCGCCTCCTGCTCGACATCTTAGGTTTGTTTGCCTTCCGCTGGCCGCCTTGTTCTCTCCGGCCCTGCGGACTGTCGTAGGGAAAGTCCGCGAAAACCAGCTCTCCGTCCACGCCCTGCGGCTCCGGCGAGGAGCGGCTGGAATATGGGGACGACTCCGGGGAATAGGAGGTGGTCAGGAACCGGAGCGAGGCCTGCTGCGGAGCCTCCAGAGCCCTCCAGTCCCACTGAGACAGAATCTTGGCTGTCAGGAGGTCCGCGTCCGTCTGAGCGAGTTCTTCAGCGAGGCTGGCCATGCTGCTGCTGGTCCTCACAGAGCTCGTGTTTAACAGCAGCTCAACCGAGGAGGTTTTATACCAGCGCGGAGTTTACGAGTTCACAGCTTTTTAGGGAGTTCAAAGAGAGTCGGAGTGGCAAACCGGGACCAAGACACGAGCTTCTTTGTCACCAAAGTGTGAATAAAGTCTAAAGGACTTGGTACTGCGCTcgagaaagaaaataattacaCTGTCTTTTGTGGGAGAGCGATTGTAAGTGTATGTGGCGCTCATTGACAGTTTAATGCAAGGAAACTAATACTAGTGATTGGAGAGTCATGCTGCCACGGAGCGGCGAAGAGTTAAAATAATGGAACGAGGTGTTTTGGCCGGTATTTCTGTAAAGGTGACGCGGAGCAGCTGTCAGTGCGCCTCGCTCCGCGCGGGTCTTTCATGTCTGGGAAGGTGTGTAACACGGCACACCGGGCAGCGGCAGCTGAAGCGGCGGGGCCATAAACTCTGGTGTTAGGAACCAAACGCTTACGCGCCTATCAGAGAAAGGAATCCGCacatttaagcagtttagtTCTTTATCTGTAAACCGCGAAAGGCTGGGTCacgttttttatttagtaaaccacACTACTTTTAGCTCGTTTTGCCACGTTACTGCTTTCTCTACAGCAGAGCCTGTATTTTACAAATGACAAAGATGcacaacatagcaacacctataTAAAGAATTATCATACCCGTGTGGGTGTTCTActttattcacactgttctaaaatGTTAGTTTGGTAAGGCACCAACAACATTTGGGAAAACATGTGGCCAGCACTCAGGGCATATCAGTTAAATTTTAGAGAATGATTTTTGTTCACTTAATAAATGTAAGTTTTAATCTCTCTGATAGTGGTAAGGGGCTGTCAGTAAAAGAACCAGAATCATCATCAGAATCTGAGCTCTGGTTGGTTTGTCCATgatttaatttctcttttttagaCAGTGTACTGATCATATTTAGTTTAGTTGCATGAGGGGCAAGAACTGTTTTGTGTGCAATTTGTGGTTTGGACTTAGCCTTTGATTTAAGTTtgcttttcttttgttcttttGCTGTAACAAATGTGGATTTCACTCGCACCTGCTGAGGGGGGTGGCATTTGGGCTCCTGCAATTTTGTTTCCTTTGAGAAAGAAGCTTTTCCCAATTCTTTTCCTTTTGATTGTTGAATAGTGGGTCCTTGTTGACCCTGAGAGTGAAGAAAATGATTTTGATTCTTAGATTGCACTTTGCAAGCTGGGCCAAAAGTGTGAGCCAAATCAGGCTTCTTCTTCATGATCTTAATTGAACATTGTTGAGCATCTACAGAGCCAACAcatttttccttgttttttttaatgaccgCTGGTTCCTCCTCTTCTGACTTACGAGCAATGGACAAGTCTGCTGTTTTGGCCACACAGCACTGAACCTGAGAAGATGGGGAGGCACTAAAGGAGAACGCATCCCAGTCAATACTGCTCAGGTGCAGCTCATCAAGCACAACAGATATAGAAGGAGATATTTGGGCTTGAGAGTATGTTCCTGATGGGCAGGGGGAAGGGGGCTTTGGTGCATCAAGTGTAGTGGAGCACTGGTCACTTGTGAATTTTGGAGTCATTATGCTGGATGAGACTGTCTCTACTGATGAGGAGGGTTCAGTTTTTGTAGATGATTGCAGAGACATAAGAGCAAAAAGATCAGCTACCACACCAGGGGAATTAGACGGCTTTTCCTTTTcagcctttgt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88840 True 2424 lncRNA 0.47 2 21714323 21716923

Neighbor

gene id symbol gene type direction distance location
LOC103044186 NA coding downstream 327864 21374232 ~ 21386459 (-)
nav3 nav3 coding downstream 357815 20983152 ~ 21356508 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding downstream 903612 20522855 ~ 20810711 (-)
myf6 myf6 coding downstream 1508668 20202098 ~ 20205655 (-)
myf5 myf5,LOC107734855 coding downstream 1524622 20183094 ~ 20189701 (-)
mrps10 NA coding upstream 92362 21809285 ~ 21818148 (-)
LOC103040407 NA coding upstream 106973 21823896 ~ 21877702 (-)
LOC103040999 LOC103040999 coding upstream 249054 21965977 ~ 21970642 (-)
LOC111192879 NA coding upstream 272332 21989255 ~ 21990070 (-)
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding upstream 531964 22248887 ~ 22273098 (-)
G65822 NA non-coding downstream 7664 21705473 ~ 21706659 (-)
LOC111192992 NA non-coding downstream 49881 21662893 ~ 21664442 (-)
G65802 NA non-coding downstream 87020 21626935 ~ 21627303 (-)
G65801 NA non-coding downstream 88644 21625480 ~ 21625679 (-)
G65799 NA non-coding downstream 101991 21612094 ~ 21612332 (-)
G65828 NA non-coding upstream 55522 21772445 ~ 21772740 (-)
G65925 NA non-coding upstream 112520 21829443 ~ 21830098 (-)
G65930 NA non-coding upstream 150232 21867155 ~ 21875310 (-)
G65935 NA non-coding upstream 182248 21899171 ~ 21928133 (-)
G65928 tmem19,LOC107687559,LOC107758202,LOC107719866,LOC107671498 non-coding upstream 188323 21905246 ~ 21910490 (-)
G65803 gen1 other downstream 29495 21629958 ~ 21684828 (-)
ost4 NA other downstream 140124 21545418 ~ 21574199 (-)
llph llph other downstream 1914721 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 2108598 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2343615 19305987 ~ 19370708 (-)
G66081 bcap29 other upstream 573762 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1336350 23053273 ~ 23160179 (-)
G66619 NA other upstream 2790911 24507834 ~ 24508281 (-)
G66642 NA other upstream 2943101 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 3799592 25516515 ~ 25530980 (-)

Expression


Co-expression Network