G65832


Basic Information

Item Value
gene id G65832
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21806164 ~ 21807211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88858
caaaaattctacatgttttttttaagattttttttttatcacatacaaatctgaaaagtgtgattggTAAAGTATTTAGTCCCTCTATATCAATAATTAGTAGAGTCACCTTTCACTGCAGTTGCAGCTGCAAGTGTTTTGGGGTTAGTCTCTACCAGCattgcacatctagagactgatATTCTAgaccccattcttctttataaaacatctgaagctcagccaggttAGATGGAGagtgtctgtgaacagcagtttcatgtctccacagaagctcaatgggatataggtcaggactttgactgggccattctaacacatgaatattctctgatctaaaccattctaTTGCCGCTCTGGCtatatgtttagggtcattggcTTGCTGGAAGGTGGACCTCCTTCCCAGtatcaagtcttttgcagccttcaacagatttttttacagGATTGTCCAAATTTatctctgtctatctttctatttactctgaccagctttcttcctttctccttgcttgatctgtcaggtTGGGTGAATTGGCATGACTTAGCAGATTTGCAGATTAGAATgccttttctatttttggatgatggattgaacagtgcttctTGAGATGCTTAAAGCttaggatatgtttttataacctaacccagCTTTAAACAACTTCTTCTTCACAattttatctctgacctgtctggtgagttccttggtcttcattatgctgtttgttcactaatgttctctaacaaaccactgaggccttcacagaacagctgtatttatactgagactaaattacacaaagCTGCACTATagtaactaattaagtgacttctgaaggcagctGATTGCACTGGagtttatttaggggttttagagtaaagggggctgaatatttttgcataCTTTTGCATACTTTTCAGACTTTTATTTGATacaaattttgaaaaccatgtatcatttttgttccactttcgtacacttatgcaatactttggGTTGGTCtaacacttaaaatctcaatgaaTACAtctaagtttgtggttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88858 True 1048 lncRNA 0.37 1 21806164 21807211

Neighbor

gene id symbol gene type direction distance location
msgn1 NA coding upstream 89216 21715452 ~ 21716948 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 367954 21410849 ~ 21438210 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 1210863 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 1308503 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 1408197 20299702 ~ 20397967 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 98048 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 125558 21932769 ~ 21956278 (+)
ptprr ptprr coding downstream 186899 21994110 ~ 22100636 (+)
LOC103042836 NA coding downstream 297629 22104840 ~ 22161850 (+)
LOC103044887 LOC103044887,LOC108435120,LOC108279510,LOC101474374,LOC100702227,LOC108233439 coding downstream 373992 22181203 ~ 22243904 (+)
G65831 NA non-coding upstream 119 21805312 ~ 21806045 (+)
G65830 NA non-coding upstream 15220 21790585 ~ 21790944 (+)
G65827 NA non-coding upstream 33417 21772453 ~ 21772747 (+)
G65781 NA non-coding upstream 96408 21705335 ~ 21709756 (+)
G65764 NA non-coding upstream 160485 21645416 ~ 21645679 (+)
G65834 NA non-coding downstream 3835 21811046 ~ 21811619 (+)
G65838 NA non-coding downstream 8325 21815536 ~ 21818247 (+)
G65840 NA non-coding downstream 13168 21820379 ~ 21820585 (+)
G65875 NA non-coding downstream 151115 21958326 ~ 21958687 (+)
G65873 NA non-coding downstream 152004 21959215 ~ 21962445 (+)
gen1 gen1 other upstream 90727 21629787 ~ 21715437 (+)
agbl5 NA other upstream 257002 21440409 ~ 21549162 (+)
G65575 nav3 other upstream 781590 21024175 ~ 21024574 (+)
G65565 NA other upstream 848529 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 2011839 19780663 ~ 19794325 (+)
ccdc167 NA other downstream 1132344 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 1192159 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 1323869 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 1415303 23222514 ~ 23323361 (+)
G66296 NA other downstream 1636963 23444174 ~ 23444677 (+)

Expression


Co-expression Network