G65838


Basic Information

Item Value
gene id G65838
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21815536 ~ 21818247 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88870
CTCCACTCTCTTAATTATAAACTTTATTATGAAATCTatatattaaaatccttcagagatgcaTTTTtggcattgttgtgtgacttcAAATATGTGTATGAAtgaattcattttatatttatatatactacatacacacacgcacacacgtacgcacacacacacatacacacatacatacatacatacatacatatgttacatatacaaaatactttaaaatgcattattattacacaGAGTCTTGTACATTGAACTAATTGCAAAAGttagatatgtaattaaaagcaCTACTAAGAACTACTtagaacattgaaaaaaaatcatttgttaCATATCTCCACTCtcttaactataaactttaccataaaatacaattattaaaatccttcagatattttttttgcattgacgTGCGAGTCCAAAATCCATTCAAACTTTTTCAAAATATACATTGTTTTATTATGAATCcataatatttatgttaaaattggttcagagtttaaaaaagataaaaaatggaGTTCCTACAAGCAGCTGGCACCCATTACGTGAAATGgcccatatatgtatataatataataaacagtgtATGTCACACTGTAATGATATATGAACAACAATAAATGTTGATTAGCCCGcttccacacacacaagaaacaagaacaattattattttcatttatgtttTGGCCATGTGGAGGCagcaaaaatcattttaatcaccacacattaaaaaaaggttatgtACATTGTAGTTAGTATtactttttacacacttttacatGCACCATGCACAATTTATGGTATCCTACACCATCCTAATAGTCTATTTCCCACTAGAGGGAGCATCAGTGCTGCTAATTACTGAGTGTGAATTTGTGGAGTGGATCACATGTTGTCCTGATTAATGACAGCTAACGAAGAGTTTGGCCATGTCAGCATAAAGACAACgttcatatacctataaatagcaaaatcagagaacctagttcagaaaatgaagtttttatatattattaatatgctatatgtctgtctttgttagagagcataatataaagtatttcagcatgaaagcttCTATTTGTAATATGTGACAGCGTCCTGTATAATtgctacatctctgctgtttgtaacaaaccaaaccgtatGAAAATCGTGTGTAAACTgttagagttgtgattattaaaagtgtattttacaccttcctcagtgtaaattaatgcactgggGGCGCAGGGttgcctcctccaatatggcggccACGCTGACACGCCAGGAGGCAGACTATGTGGCGTCTACGTATAAGATGTCTATGGGTGAACTGTTTTCTGCTGTAACAGTAAAGAGTTGACTAATTTTGTTTCACATCATTGTTCGGCCTAATTATTCAAGTGGTGACACAgcacatacataacatacagcTCAGTTGGAGCCACAGCCACACTCTTCTACACACTTAAATAAAAGTCCAGTGTGTTATTAAATGAATTTCTCTCCAAGGTCTGGAGGCTTATTTTGACAGTGTGATTCCTCTaaaagcagcattatttttttgtctttgcctcacctgcttctgtctttGTACAGtctactagtatctcaaaaatattgagatagtaagtcattattttgagatactatctcaaaataatgacttactacttcgaaatattgagatagcaatttacttaataataataaaaaaaagaatgtgctggattatttttttttaggtggcgggaatgggcttccatggGTTTCACccattttagaagttttttgtttgtttgtttatttacccaATAAATGTTATCTTACTACAATATTCAGCAGCATGCATTTAAGCAAGAGCAGTCAAATGGTCAGGGAGAAATTCATGAACAATTCATACTGAAAGTTTTAAGTGTAAAACGCAAACatgttctaaaataaaaatgtaacttaCAGAACGGGATGTCTGGGTCTGACGAACACGTCCTGTGTGAAGGAAGACTGCAGGAACCATATAAACACTGCTGCTGCAACAATAAAGGCTGATTAAATGGTCTTGGATTTATTAACTTCGATTCCAATACAGACCATGACCATTGAACAAACACATACACTAGATTCCTCCACATTAGAATTAACTCGATGCTGCTCATCGTACATGTTGCCCTCTATCTGCTTTGGATTCATTAAAATTTGTAACATAAATATCACTCTTGCACCATACCTGAtaagattacattttttgtaagcgtcttttttttttttttttagcagtggcGCCCTTACTCTTCTAGCTGTATATACGTTATATGTATTGAATCTGTTTCCCCAGCCCACAGACACTGACCGTGTTAACGCTGAGTGTTGAAGGGGGAGCGGGGGGACACCAGgccgagcagcagcagcagcagCCTTAGAGGCGAAATCCCGCACTGCCTTTGACCAGAGCGCTGCACCCGCTGTCCTCATGGACGCCGCCATTGTATCTCAATATCTGCAGCAGAAGAAGAGCAGCAAGCCGTCGGGTTTTCTCCAGCAGGGCGCCACCAACCGACCGCAAAGAATATAGACATCAAGATCATAACCAACCCAACCCCAGaagaacccatcctactcgatCGGGTTgtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88870 True 2626 lncRNA 0.36 2 21815536 21818247

Neighbor

gene id symbol gene type direction distance location
msgn1 NA coding upstream 98588 21715452 ~ 21716948 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 377326 21410849 ~ 21438210 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 1220235 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 1317875 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 1417569 20299702 ~ 20397967 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 87012 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 114522 21932769 ~ 21956278 (+)
ptprr ptprr coding downstream 175863 21994110 ~ 22100636 (+)
LOC103042836 NA coding downstream 286593 22104840 ~ 22161850 (+)
LOC103044887 LOC103044887,LOC108435120,LOC108279510,LOC101474374,LOC100702227,LOC108233439 coding downstream 362956 22181203 ~ 22243904 (+)
G65834 NA non-coding upstream 3917 21811046 ~ 21811619 (+)
G65832 NA non-coding upstream 8325 21806164 ~ 21807211 (+)
G65831 NA non-coding upstream 9491 21805312 ~ 21806045 (+)
G65830 NA non-coding upstream 24592 21790585 ~ 21790944 (+)
G65827 NA non-coding upstream 42789 21772453 ~ 21772747 (+)
G65840 NA non-coding downstream 2132 21820379 ~ 21820585 (+)
G65875 NA non-coding downstream 140079 21958326 ~ 21958687 (+)
G65873 NA non-coding downstream 140968 21959215 ~ 21962445 (+)
G65874 NA non-coding downstream 151262 21969509 ~ 21970077 (+)
G65882 NA non-coding downstream 170998 21989245 ~ 21989543 (+)
gen1 gen1 other upstream 100099 21629787 ~ 21715437 (+)
agbl5 NA other upstream 266374 21440409 ~ 21549162 (+)
G65575 nav3 other upstream 790962 21024175 ~ 21024574 (+)
G65565 NA other upstream 857901 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 2021211 19780663 ~ 19794325 (+)
ccdc167 NA other downstream 1121308 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 1181123 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 1312833 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 1404267 23222514 ~ 23323361 (+)
G66296 NA other downstream 1625927 23444174 ~ 23444677 (+)

Expression


Co-expression Network