G65948 (rab21,zgc:154045,LOC106609839,LOC107690748,LOC107687573)


Basic Information

Item Value
gene id G65948
gene name rab21,zgc:154045,LOC106609839,LOC107690748,LOC107687573
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21932824 ~ 21956269 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88992
AAGTTATTTAATAATCATCTTTTAACTAAAAGAAAATTCTGCACAACAATCCATCATGTTCAACATCCTCGCAAAAGAACAGGAATCATCAGACTGTAAGAACAGTGTGCTATTAAAGAGTCAGTgagagaaaatgtgtgtgtttacggCAGGGGATGGCCTTTGGCATTTGGCATCAGACTGAGTGTCCACTAGCTCCAGCAGCTTTCCAAACAGATGAAGCACTGAGAAATAAATCTGCTGAAGTGAACGACTTCAAGCAGACAACCAGCGGAGGATGAAGAGTGGCAGTCTTTTTTGAAGGGAGAGGaaacacaaaaagagagaaagacagagaatgGGTTTGaaatagagcgagagagaaggacaaaagagagaaagagtgggaaAATATCCTAGCCTGATGAACAGCAGCCAGCTGCAGCAGTAGCAGCCTGGGGCTCATCGTCGATGATCTGAACGCCTCTACGCCCTGTGTTTGCATGACTTGCTCCATTCCCCTTCGATCTCTCCTCCAATTGTGCTGTCTCCATCATTCTTTTACACAGGTCAAGGAACAATTCTTCAATTCCTTTGTTTAATTTAGCTGATGTGTGATAGTGTTTTGCCCCAACAGACTCTGCATACCCCTCAGCCTCTTCCACTGATACATGCCTCTCTTTATCCAGATCTATTTTATTACCTACTATACATAAACATATGTCATTCCCCAACATTTTCCTTAATTCTTTGACCCAGTTTTTCACCTTCTGAAAAGAGTCTTCATCTGTGATGTCATACACCAGAATGGCTCCGTTGGAGTCTCTGTAGTAGATTGGCCCAAGAGCATGAAACCGCTCCTGTCCAGCCGTCCTGCAGGGTGGTGATGTGCTTGTCGTTGAATTTGTTTTCACAGTAGCGAAGCACCAGCGAGGTCTTGCCGACACAGCCCTCCCCCAATAAAACCACCTTGAAGGAGTATGTTTTGTTGCTGCCTGCTGCTCCGCCAGCCGCCATGGCGAAAGAAGAAGCTCGTCTTCAGCTCAGACAGAGGAAAACCGGCCGCTCTCCTCCCGCGGGCTCACATCAGACACCTGCCTGAACGGAGAACGAGGGGTGACGAGCCTCCAAACCGGCGAAAACACCGAAATATGGAGGTATATCTCCCTCCTGTCTGCGGCCCAGGCTAATGGCGTCCT

Function

symbol description
rab21 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within Rab protein signal transduction and protein transport. Predicted to be located in several cellular components, including bounding membrane of organelle; cleavage furrow; and endoplasmic reticulum membrane. Predicted to be active in early endosome. Orthologous to human RAB21 (RAB21, member RAS oncogene family).

NR:

description
ras-related protein Rab-21 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88992 True 1178 lncRNA 0.47 6 21932824 21956269

Neighbor

gene id symbol gene type direction distance location
LOC103040407 NA coding downstream 55122 21823896 ~ 21877702 (-)
mrps10 NA coding downstream 114676 21809285 ~ 21818148 (-)
LOC103044186 NA coding downstream 546365 21374232 ~ 21386459 (-)
nav3 nav3 coding downstream 576316 20983152 ~ 21356508 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding downstream 1122113 20522855 ~ 20810711 (-)
LOC103040999 LOC103040999 coding upstream 9708 21965977 ~ 21970642 (-)
LOC111192879 NA coding upstream 32986 21989255 ~ 21990070 (-)
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding upstream 292618 22248887 ~ 22273098 (-)
LOC103043373 LOC108435080,LOC108279430,LOC107729145,LOC107656392,LOC107590530,LOC107583931,LOC107708018,LOC107658953 coding upstream 348936 22305205 ~ 22352523 (-)
pde3a pde3a,LOC107707962 coding upstream 406885 22363154 ~ 22401341 (-)
G65935 NA non-coding downstream 4691 21899171 ~ 21928133 (-)
G65928 tmem19,LOC107687559,LOC107758202,LOC107719866,LOC107671498 non-coding downstream 22334 21905246 ~ 21910490 (-)
G65930 NA non-coding downstream 57514 21867155 ~ 21875310 (-)
G65925 NA non-coding downstream 102726 21829443 ~ 21830098 (-)
G65828 NA non-coding downstream 160084 21772445 ~ 21772740 (-)
G65949 NA non-coding upstream 1225 21957494 ~ 21958918 (-)
G65950 NA non-coding upstream 3028 21959297 ~ 21961106 (-)
G65963 NA non-coding upstream 8689 21964958 ~ 21965696 (-)
G66004 NA non-coding upstream 174819 22131088 ~ 22131593 (-)
G66022 NA non-coding upstream 205402 22161671 ~ 22162400 (-)
G65803 gen1 other downstream 247996 21629958 ~ 21684828 (-)
ost4 NA other downstream 358625 21545418 ~ 21574199 (-)
llph llph other downstream 2133222 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 2327099 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2562116 19305987 ~ 19370708 (-)
G66081 bcap29 other upstream 334416 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1097004 23053273 ~ 23160179 (-)
G66619 NA other upstream 2551565 24507834 ~ 24508281 (-)
G66642 NA other upstream 2703755 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 3560246 25516515 ~ 25530980 (-)

Expression


Co-expression Network