LOC111193001


Basic Information

Item Value
gene id LOC111193001
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23396483 ~ 23400422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU89364
CGGATcttttgattcagcgcaagctaaactactcgatcCAGCTCATCTGATACCCGGCCCAGAACGTAACCTGCCTGACTCGCTGATTCTACGCCTCAGCACCAGCGCCAGCTATTCTGCTCGACACAGCGAATCAGTTCCCAGACAGCGCGaccaccctccctccctccctaccTGCCGTTCTTTTTCAGTTCCCTCAATCCCTGcaagcgaggcggacccctgcGCCCGGCCATACTAACGCGCTGAATTCTTCAGTCGTCACTTCTCTCCGCCTGCTGGTTGAAGTCCCTCTAGTGTCCGCGTTCTTCGTCCAGGCGCCCCTGTCTGCTGTGATGACCTTCGGTCCTGCCTGTTGCT
>TU89365
CGGATcttttgattcagcgcaagctaaactactcgatcCAGCTCATCTGATACCCGGCCCAGAACGTAACCTGCCTGACTCGCTGATTCTACGCCTCAGCACCAGCGCCAGCTATTCTGCTCGACACAGCGAATCAGTTCCCAGACAGCGCGaccaccctccctccctccctaccTGCCGGTGAGGCCGATCTATTATCTCGAATTAATACATGGTTCCCTCAGTTTGATCTATTGTTCTTGATTTACTcgattgttccctctatttatatCGGTTtcctctattttattatttactctatTCATTGTTCCCTTAATTCATTCAATGTTCCCTATAATTAATTCACTGTTCCTTCGTTCAAtcaatttattgttccctctatttaattattGTTCTCTCTAGCATTCCGTCAAACTGTTTGCCTGTTCAGCATTATGTATTATTCCCTCTATGTAATTTactgttccctctatttatttaattgttccctCAATCCATTTCACCATTCCCTAGATCTATTTCACTGTTAGATTTAAGTTATTGTTCCCTCTTTTTATTCATCGCTCCCTCGATTTATTGACCTTTTCCTCGATCTGTTTCACCGCTAGATTTAagttattgttccctctattcaTCGTTCCCTCGATTTATTAATCATTCCCTCGATCTGCTTCTCAGCTAGATTTAAGTtgttgttccctctatttactcATCGTTCCCTCAATTTATTAATCGTTTCCTCGATTTATTTATCATTCCCTCAATCTATTTCatcactggattttatttattgttccctcttcATTGTCCCCTCGATTTATTAATCATTCCCTCAATCCATTTCCCTGCTAGTTTAATtgtgttccctctatttattcaCCGTTCCCTCAATTTATTAATCATTCCCTCGATCTATTTTACAGTTCGATTCAATTTGTTTCCtctatttaattaatcatttcaCTCTATTCATTGTTCCCTCGATCCATTTCACCATTTCCCTTGGTCTATTTCACTGTTCCTTCGTTC
>TU89368
GTTCCCTCAATTTATTAATCATTCCCTCGATCTATTTTACAGTTCGATTCAATTTGTTTCCtctatttaattaatcatttcaCTCTATTCATTGTTCCCTCGAtccgttcccctgttccctcgatccgttcccctgttccctcgttcccctgttccctcgttcccctgttccctagttccctcgttCCCCTTGTTCCCtggttcccctgttccctcctTCCCCCGTTCCCTCATTCCCCTGTTCCttcgttcccctgttccctggTTCCCTCGTTCCCCTTGTTCCTtggttcccctgttccctcgttcccctcttccctagttccctcgttacgttccctagttccctcgttacgttcccctgttccctcgttcccctgttccctctTCCCTAGttccccccgagttccccagtTCCCTCGttccccccgagttccccagtTTCCGAGTTCCCCAGTTTCCGAGTTCCCCAGTTTCCgagttcccccgttcccctgttccctcgatccgttcccctgttcccttgATCCATTCCGCGACGGCTCCTTTCTAATTCCTCGATTCTGTTGTTTCCTCAGTTCTTTTTCAGTTCCCTCAATCCCTGcaagcgaggcggacccctgcGCCCGGCCATACTAACGCGCTGAATTCTTCAGTCGTCACTTCTCTCCGCCTGCTGGTTGAAGTCCCTCTAGTGTCCGCGTTCTTCGTCCAGGCGCCCCTGTCTGCTGTGATGACCTTCGGTCCTGCCTGTTGCT
>TU89370
CGGATcttttgattCAGAACGTAACCTGCCTGACTCGCTGATTCTACGCCTCAGCACCAGCGCCAGCTATTCTGCTCGACACAGCGAATCAGTTCCCAGACAGCGCGaccaccctccctccctccctaccTGCCGGTGAGGCCGATCTATTATCTCGAATTAATACATGGTTCCCTCAGTTTGATCTATTGTTCTTGATTTACTcgattgttccctctatttatatCGGTTtcctctattttattatttactctatTCATTGTTCCCTTAATTCATTCAATGTTCCCTATAATTAATTCACTGTTCCTTCGTTCAAtcaatttattgttccctctatttaattattGTTCTCTCTAGCATTCCGTCAAACTGTTTGCCTGTTCAGCATTATGTATTATTCCCTCTATGTAATTTactgttccctctatttatttaattgttccctCAATCCATTTCACCATTCCCTAGATCTATTTCACTGTTAGATTTAAGTTATTGTTCCCTCTTTTTATTCATCGCTCCCTCGATTTATTGACCTTTTCCTCGATCTGTTTCACCGCTAGATTTAagttattgttccctctatttattcATCGTTCCCTCGATTTATTGACCTTTTCCTCGATCTGTTTCACCGCTAGATTTAagttattgttccctctattcaTCGTTCCCTCGATTTATTAATCATTCCCTCGATCTGCTTCTCAGCTAGATTTAAGTtgttgttccctctatttactcATCGTTCCCTCAATTTATTAATCGTTTCCTCGATTTATTTATCATTCCCTCAATCTATTTCatcactggattttatttattgttccctcttcATTGTCCCCTCGATTTATTAATCATTCCCTCAATCCATTTCCCTGCTAGTTTAATtgtgttccctctatttattcaCCGTTCCCTCAATTTATTAATCATTCCCTCGATCTATTTTACAGTTCGATTCAATTTGTTTCCtctatttaattaatcatttcaCTCTATTCATTGTTCCCTCGATCCATTTCACCATTTCCCTTGGTCTATTTCACTGTTCCTTCGTTC
>TU89371
GTTCCCTCAATTTATTAATCATTCCCTCGATCTATTTTACAGTTCGATTCAATTTGTTTCCtctatttaattaatcatttcaCTCTATTCATTGTTCCCTCGAtccgttcccctgttccctcgatccgttcccctgttccctcgttcccctgttccctcgttcccctgttccctagttccctcgttCCCCTTGTTCCCtggttcccctgttccctcctTCCCCCGTTCCCTCATTCCCCTGTTCCttcgttcccctgttccctggTTCCCTCGTTCCCCTTGTTCCTtggttcccctgttccctcgttcccctcttccctagttccctcgttacgttccctagttccctcgttacgttcccctgttccctcgttcccctgttccctcgttacgttcccctgttccctcgttacgttcccctgtttgttacgttcccctgtttgttacgttcccctgtttgttacgttcccctgttccctcgttcccctgttccctcgttcccctgttccctagttccctcgttacgttcccctgttccctagttccccccgagttcccctgttccctcgttcccctgttccctagttccctcgttacgttcccctgttccctcgttcccctgttccctagttccccccgagttccccagtTCCCTAGttccccccgagttccccagtTCCCTCGttccccccgagttccccagtTTCCGAGTTCCCCAGTTTCCGAGTTCCCCAGTTTcctcgatccgttcccctgttcccttgATCCATTCCGCGACGGCTCCTTTCTAATTCCTCGATTCTGTTGTTTCCTCAGTTCTTTTTCAGTTCCCTCAATCCCTGcaagcgaggcggacccctgcGCCCGGCCATACTAACGCGCTGAATTCTTCAGTCGTCACTTCTCTCCGCCTGCTGGTTGAAGTCCCTCTAGTGTCCGCGTTCTTCGTCCAGGCGCCCCTGTCTGCTGTGATGACCTTCGGTCCTGCCTGTTGCT
>XR_002650201.1
ATACCCGGCCCAGAACGTAACCTGCCTGACTCGCTGATTCTACGCCTCAGCACCAGCGCCAGCTATTCTGCTCGACACAGCGAATCAGTTCCCAGACAGCGCGaccaccctccctccctccctaccTGCCGTTCTTTTTCAGTTCCCTCAATCCCTGcaagcgaggcggacccctgcGCCCGGCCATACTAACGCGCTGAATTCTTCAGTCGTCACTTCTCTCCGCCTGCTGGTTGAAGTCCCTCTAGTGTCCGCGTTCTTCGTCCAGGCGCCCCTGTCTGCTGTGATGACCTTCGGTCCTGCCTGTTGCTTATTTGGGGACTAAGCTGGACTCTCTCTACTTCAGGCTTCTCTTCTTTGATTTCAGAACAATCCTGTCTTCCAAGCTGCATGCGACATCATGCAGGACCCATCATCAGTTGCAGGCCCATTATTGGTTCCCTCGTAATGAACTGTGGAAGTGTGGAAATCCAGGGAACTAACTCTTCAAACAAGATCAGACTGTTTAACTCTGTCAAATCAGTACTGCTGTACGGAGCAGAAATTTGAAGGACAACAGTGCCAACAATGAAGAGAGTGCagacattcattaattcatgtCTGCACAATATTCTCCAGATCCACTGGCCAAACATCATCAGCAATCAGGATCTGTGGTAGAAACAATCCAACTTCCTACAAGAAGAAGAGTTCCAGAAAGGTGTTGGAGATGGATCGGACTCAGTCTTCGGAAGCCTGCCTCCAACATCACTAAGCAAGCACTGACCTGGAACCCAGGGAGAAAGAAGTAGAGGAAGGCCCAGAAACATGTCGCGTAGGGATCTGGATGCGGACTTAAGCGGATGTGGTACACCTGGAGTCAAGTAGGACAAAGGCCCAGGATCGGGATGCCTGGCGAAATCTTGTTGAGGGCGTATGCCCCAGAAGGAGCGAACGGACCTGACAAAGTAAAGAACAGACTTCAGGCCAAAAAGGGACAATCAGTCCACCTTAAACTTCATGAGATCAACCCCTATTCTCAGCCGATTGGCCTTCAACCCAGTTGGGAGCAAGTGTCATACCCTAGACGTTGATTTAGATTTTCATGGTTGTCACATTCCCTTGTCAAGAGAAGATAACTCACCCGGCCACAAAACCTGTCGAACTCCCCATTCAGTCAAACATTATACTGGTTTTCAAATCGTATCACGAGGACGATGCTAACTCTGCATGCCATCTACTATTAAGACTTTTCACTCAAACCACCCGAAACGCCGTTCAAGATCTTATGAAGTTCTGCTGAAGACCCCAGACTCTCACTTTCGCTTACCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89364 False 360 lncRNA 0.58 2 23396483 23399420
TU89365 False 1029 lncRNA 0.38 2 23396483 23397609
TU89368 False 758 lncRNA 0.55 3 23398329 23399420
TU89370 False 1062 lncRNA 0.38 3 23396483 23397609
TU89371 False 996 lncRNA 0.55 3 23398329 23399420
XR_002650201.1 True 1313 lncRNA 0.50 2 23396532 23400422

Neighbor

gene id symbol gene type direction distance location
lrp6 lrp6,LOC100705426 coding upstream 311439 23020384 ~ 23085044 (+)
LOC103025638 mansc1 coding upstream 383710 23004755 ~ 23012773 (+)
bcap29 bcap29 coding upstream 1098804 22284747 ~ 22297679 (+)
dus4l dus4l coding upstream 1118461 22274641 ~ 22278022 (+)
LOC103044887 LOC103044887,LOC108435120,LOC108279510,LOC101474374,LOC100702227,LOC108233439 coding upstream 1152579 22181203 ~ 22243904 (+)
rerg rerg,LOC107662225,LOC107669035 coding downstream 51141 23451563 ~ 23548257 (+)
etv6 etv6 coding downstream 515884 23916306 ~ 23953720 (+)
LOC103023565 fam19a2,LOC103023565,LOC108411383,LOC108248567,LOC106529719,LOC103364248 coding downstream 626039 24026461 ~ 24117713 (+)
lrig3 lrig3,LOC104942525 coding downstream 896495 24296917 ~ 24320066 (+)
LOC111192915 NA coding downstream 1058981 24459403 ~ 24461001 (+)
G66223 NA non-coding upstream 192 23395746 ~ 23396291 (+)
G66207 NA non-coding upstream 169616 23226030 ~ 23226867 (+)
G66183 NA non-coding upstream 191776 23107886 ~ 23204707 (+)
G66201 NA non-coding upstream 206817 23184357 ~ 23189666 (+)
G66143 NA non-coding upstream 427180 22963871 ~ 22969303 (+)
G66305 NA non-coding downstream 108553 23508975 ~ 23509533 (+)
G66334 NA non-coding downstream 173681 23574103 ~ 23574333 (+)
LOC111192880 NA non-coding downstream 193806 23594228 ~ 23599591 (+)
G66338 NA non-coding downstream 194439 23594861 ~ 23595114 (+)
G66353 NA non-coding downstream 417651 23818073 ~ 23820977 (+)
eps8 eps8 other upstream 73122 23222514 ~ 23323361 (+)
crebl2 crebl2,LOC107707978 other upstream 258472 23131080 ~ 23138011 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other upstream 393015 22999370 ~ 23003468 (+)
ccdc167 NA other upstream 447284 22939555 ~ 22949199 (+)
gen1 gen1 other upstream 1681046 21629787 ~ 21715437 (+)
G66296 NA other downstream 43752 23444174 ~ 23444677 (+)
G66303 NA other downstream 82911 23483333 ~ 23483933 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other downstream 297730 23698152 ~ 23720094 (+)
rpap3 rpap3 other downstream 967070 24367492 ~ 24383022 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other downstream 1118200 24518622 ~ 24552340 (+)

Expression


Co-expression Network