G66601 (rpap3)


Basic Information

Item Value
gene id G66601
gene name rpap3
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24368438 ~ 24373280 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU89846
gtctGAAGAAAGATGCTGCTCGGTTTGTCGGCAGAACAGGATTGTATGGGTCAGCACTCATTCCTCTGGTGTAGCATTCAATGGCCTCGTCATACTTTCCGTCTTTAAAGAACTGGTTGCCtttctccttctctttcattGCCAGGTCTCTGTCCACCTGCACCTCCTCCGAGTCAGAGTCATTCGATTCTGGGCTCTCTTCTTTGTCCACTGTCTCAAGAGCTTTATCCACATCAAACTTTTCCCATGACTGATAATCATATGATTTTATTCTCTGTACTGGCTTCTGCTCTTCTTGGCTGTTCTTGTCAGGAACTTTACCTTTGACGCGTCGTTTCTTCTTGTAATCTTTGTTTCTCACAGGTGGAAGAGTTTTCTGTGATTCTGTTACACTTCCTGTGCGAAGCTcttcatctttcttttttatgtcgACCTCCCAGGTTTCAAGCTCCCTCATGAAGTTCTGGAGATCCTCCGAATTCTGACGCATCTGCATCTGCAGCTCAATGGCTTTATTGCCCCCCGACatgctgcagtgtttttttcagtCTCGTTACTCAGCAGAACGCACGCTGATCTTGTCTGTTTG
>TU89847
ctttctccttctctttcattGCCAGGTCTCTGTCCACCTGCACCTCCTCCGAGTCAGAGTCATTCGATTCTGGGCTCTCTTCTTTGTCCACTGTCTCAAGAGCTTTATCCACATCAAACTTTTCCCATGACTGATAATCATATGATTTTATTCTCTGTACTGGCTTCTGCTCTTCTTGGCTGTTCTTGTCAGGAACTTTACCTTTGACGCGTCGTTTCTTCTTGTAATCTTTGTTTCTCACAGGTGGAAGAGTTTTCTGTGATTCTGTTACACTTCCTGTGCGAAGCTcttcatctttcttttttatgtcgACCTCCCAGGTTTCAAGCTCCCTCATGAAGTTCTGGAGATCCTCCGAATTCTGACGCATCTGCATCTGCAGCTCAATGGCTTTATTGCCCCCCGACatgctgcagtgtttttttcagtCTCGTTACTCAGCAGAACGCACGCTGATCTTGTCTGTTTG

Function

symbol description
rpap3 Is expressed in alar plate midbrain region; forerunner cell group; immature eye; and optic tectum. Orthologous to human RPAP3 (RNA polymerase II associated protein 3).

NR:

description
PREDICTED: RNA polymerase II-associated protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89846 True 589 lncRNA 0.46 5 24368438 24373280
TU89847 False 469 lncRNA 0.45 4 24368438 24372546

Neighbor

gene id symbol gene type direction distance location
atp23 atp23,LOC106609469,LOC106576246 coding downstream 865 24362007 ~ 24367573 (-)
slc16a7 slc16a7,LOC108248566 coding downstream 99989 24230215 ~ 24268449 (-)
LOC103022829 NA coding downstream 349721 24001682 ~ 24018717 (-)
LOC111193004 NA coding downstream 368938 23995282 ~ 23999500 (-)
LOC103022521 NA coding downstream 375625 23961974 ~ 23992813 (-)
LOC111192881 NA coding upstream 11684 24384964 ~ 24388696 (-)
LOC111192914 NA coding upstream 18731 24392011 ~ 24397445 (-)
LOC103035956 mapk12b,LOC103035956,LOC108442322,LOC108279513,LOC107656379,LOC107579544,LOC107710136,LOC103459704 coding upstream 31884 24405164 ~ 24414312 (-)
LOC103035641 mapk11,LOC103035641,LOC108442323,LOC108279456,LOC107579565,LOC107725929,LOC107656380,LOC107583972,LOC105020226 coding upstream 44219 24417499 ~ 24440903 (-)
LOC107197568 NA coding upstream 71269 24444549 ~ 24447478 (-)
G66600 NA non-coding downstream 82 24368113 ~ 24368356 (-)
G66509 NA non-coding downstream 14735 24353301 ~ 24353703 (-)
G66496 NA non-coding downstream 77648 24290588 ~ 24290790 (-)
G66438 NA non-coding downstream 455965 23911791 ~ 23912473 (-)
G66416 NA non-coding downstream 670011 23698158 ~ 23698427 (-)
G66602 rpap3 non-coding upstream 621 24373901 ~ 24380582 (-)
LOC111192882 NA non-coding upstream 74398 24447678 ~ 24452700 (-)
G66623 NA non-coding upstream 138880 24512160 ~ 24512552 (-)
G66627 NA non-coding upstream 158991 24532271 ~ 24533872 (-)
G66646 NA non-coding upstream 375183 24748463 ~ 24748736 (-)
dusp16 dusp16 other downstream 1208259 23053273 ~ 23160179 (-)
G66081 bcap29 other downstream 2076756 22290685 ~ 22291682 (-)
G65803 gen1 other downstream 2683610 21629958 ~ 21684828 (-)
ost4 NA other downstream 2794239 21545418 ~ 21574199 (-)
llph llph other downstream 4568836 19795154 ~ 19799602 (-)
G66619 NA other upstream 134554 24507834 ~ 24508281 (-)
G66642 NA other upstream 286744 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 1143235 25516515 ~ 25530980 (-)
tmem258 NA other upstream 3659421 28032701 ~ 28035961 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other upstream 3747980 28121260 ~ 28132788 (-)

Expression


Co-expression Network