G66692


Basic Information

Item Value
gene id G66692
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 25107586 ~ 25110013 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU89963
tttgaaccgGTTGATCTAGCTTCGTCATTTactgtaacggtaatgagaattattctggatcatataagattaatgtgaaggtcttcgtgagaatcaccctTATGGTTACACTTAAGATTATCATCACGGGACCAACACAAGTACACCGCTTCCCCCTTGGACCCCTGCTTACCACAAGTAACCACGTCGCATAAGTTCACTGTCCATATTGTCATCTCACCCCAATATTAGTCTAATTCTATACCTCCCCAGCGCCTGATGCATTTTGAGTTAGGCTGATTGATGGTTGATCGTTTGGTTCTATTAAGCTGTGTGGGCTGGTCTTTAGCTGTTGCGTTTGTCGGGTGTACGGTTGCTGATGTGTTTACAATTGTTCCCTCTACCGTTGTTAGTTGTTCTTGCTTTGATACGATGGCCAATGTTATTATCATGATACCCATGAGGGCAACGGTTATTATTATCTGGAGCCATATTGGAATAGCCAGAGGAAATGCTTGTCCGTTATAGTATCCGTACTTTGACCTGTCCCACTCCCTTTTTCCGTACCAAGCCAttattaaaccaaaaatgtgttttccctctAAGTTTTCCACTATTTAGTAAACTtattatctatagctctatatgtgtaagtgttaaggttacagagtgtatatatttttttttttacaatttcgtTTTTTCAAGAGTCTTTCGGCCACCTGTAAAGGAAAGCAATGTTCAGTACaacctgtaaagaaaaaataatgtgttcccCCCCTACTTTAGCAAATCACAGTTTATAAccctatatgtgtaaatgttaaagttgcAATTCGTGTTGTtcgtttcttctttcttcttgtttCAGGGTTCTGAAGGTATACTACCTTGATGTCTGCAATATCAGTGAATGAAAAGTATGGTGTGTGATAAgactatgtgtgttttttaatgagatgtgtttaagagtctctgtatgtagtgtacttTGACGCAATCGAAACGTTGTTGAATGAGTCACTCCCTCAATTCCTCTCCTCGGTCACAGCCATGCTGTGTgctgtctgctgctgtgctctgAGAAATCTTTTCTCTGCTGTGGCCAGGCCAGGCCCGTGCTGCGGGGGCTCTGCTacccctccttcctgctgcggGCCTCCATCTGGGTCAGACGATTCAGCTGCTGTGCTCACCTCTCCCTCTGGCTCTCTAAGCGATCTCTGTTGTTGCACAGCTGTAGAACCCTCGCCTATCAGTTGATCTGCGTACGTTGTTCTCTCAGTCACCTGGAAAGGCCCAATCCAGCCAGACTCGTTCCCCTTTCGTGCGCAATGGCGGACGAACCCTCACTCTGTGTCCGGACTGGTCCACCTTTGCACCACGTTCTCCTTCTCCCcctgtgtaaacagatctgaaacGAAACTTTTGTATTCGTTATAATCACGTTTAAGGTTCACTATTCATTTTGGAAGTCTTTTAAGGCGTCCTCCGTGTCTCCTTCCTgtaagttaaaatacatggttaaaatacatttatcagaCTTGACTTGAGCTCTAATTTCCCCTTGGaagttaattatttcatatttaaattttgtctgtgcacagatttcagcccaattttgttttcttaccttcTTCAGTTGTCCTGATTTTCAGTTATACTCAATCATGATCTTTACTgtcaaaagtgctttaaatcccTAACTTTTAggaattttcaattttaaattgcaACATTTAATTATCATCACCATTAATTACTTTCTTTTACCTTTCTTTTGTTCACATCCCTCTCCCTTTTAGTGTAACTGCTTCCCTGTGGCTCTGTTATATTCAAATTAGCTCTTACAAACACTACTAATGTTCACCACCCAGTTTACCACTAGACACACACTATTTctcatacatgcacacactcacaaactcaaacacttccactctcacaaacactaacCAAGCTAAAGATCACACACCTCAACTCTGCAGCATCATTGTacagaccatattttactgcttcacagcacaaaactgctgctttaaacgcaCCTGCTGTTAAGCCTCCCACTTAAAGCTTCCTGTAGATCTTCTCATATTGTATTGGTAATACtatatagataatagataagaAACAAACACCTGGAAATACatctaaatcatgttttttacataGATCGTAATGATCAGCTGCTCTATTTTCCCCTCCATATCCACACTGACTGATAGAATATCAGGGCCCAAAGttttaa

Function

NR:

description
PREDICTED: stromelysin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89963 True 2230 lncRNA 0.41 4 25107586 25110013

Neighbor

gene id symbol gene type direction distance location
LOC103033942 LOC103033942,LOC108442313 coding upstream 547964 24555601 ~ 24559622 (+)
LOC103034593 LOC108442311 coding upstream 590230 24510489 ~ 24517356 (+)
LOC111192915 NA coding upstream 646585 24459403 ~ 24461001 (+)
lrig3 lrig3,LOC104942525 coding upstream 787520 24296917 ~ 24320066 (+)
LOC103023565 fam19a2,LOC103023565,LOC108411383,LOC108248567,LOC106529719,LOC103364248 coding upstream 989873 24026461 ~ 24117713 (+)
snupn snupn,LOC107673280,LOC107738646 coding downstream 268424 25378437 ~ 25387120 (+)
ptpn9 ptpn9,ptpn9a,LOC107727494,LOC107673262,LOC107560010 coding downstream 284422 25394435 ~ 25423664 (+)
sin3a sin3a coding downstream 316724 25426737 ~ 25449256 (+)
wdr61 wdr61 coding downstream 398867 25508880 ~ 25515348 (+)
ireb2 ireb2 coding downstream 421033 25531046 ~ 25547668 (+)
G66689 NA non-coding upstream 5204 25101087 ~ 25102382 (+)
G66685 NA non-coding upstream 18037 25089283 ~ 25089549 (+)
G66658 NA non-coding upstream 258571 24847649 ~ 24849015 (+)
G66657 NA non-coding upstream 279779 24827541 ~ 24827807 (+)
G66656 NA non-coding upstream 291517 24811415 ~ 24816069 (+)
G66698 NA non-coding downstream 62618 25172631 ~ 25172971 (+)
G66710 NA non-coding downstream 148366 25258379 ~ 25259573 (+)
G66712 NA non-coding downstream 196606 25306619 ~ 25306983 (+)
G66714 NA non-coding downstream 218768 25328781 ~ 25334442 (+)
G66718 snx33,LOC107680142,LOC107560006,LOC107673279 non-coding downstream 225322 25335335 ~ 25340456 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 423006 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 555246 24518622 ~ 24552340 (+)
rpap3 rpap3 other upstream 724564 24367492 ~ 24383022 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other upstream 1387492 23698152 ~ 23720094 (+)
G66303 NA other upstream 1623653 23483333 ~ 23483933 (+)
cspg4 cspg4 other downstream 79172 25189185 ~ 25300875 (+)
LOC111192916 NA other downstream 970439 26080452 ~ 26092119 (+)
oaz2 oaz2,LOC108432726 other downstream 3039247 28149260 ~ 28220857 (+)
G67459 NA other downstream 4447123 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 4475963 29585976 ~ 29592287 (+)

Expression


Co-expression Network