LOC111192916


Basic Information

Item Value
gene id LOC111192916
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 26080452 ~ 26092119 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU90292
cgaACTCTTCGGAGCTCGTGAgtggcagcggcagcagcagcggaaACTCTTCGACAGAAGGACACTCTACAACTCTTAAACACcagtttactgttttatattcactgttttaatatctgtattatcttttaattactgtataattgtattatctttactgtttttcactttttactaattaattgtatttttgtttttcaggttACTGTAGCGGCTGAGGGAGCTCACCGGTCAGGTATGGATCCCCAGTGGAGGAGCGAACCTCTTCCAATAGTGGCGCAGTCAGGAGACTTTTCTTTCAGGACTCGTCCTGTGTCTCCGTGGCAGGGTGATGAGCCAGCCGCCTGGGAGGAGCCCCCGCCGTGTCAGCCCGGGTCTCTCGAGATGAAGCGGCGGGCCCACATTAAGATGTGGATAGAAGGTCAGCTGGAGGGACTCCTGCCCACCTCCCACCCAGAGTCTCCATTGCCTTCAACCACACCTGCAAGGTATGGCTGCAAGACTCTGGTGGCGATTGCGGAGGCAGAACCCTGGAACAGGCTGAACACTGCTGGTCCAGTTGCACAGTGTGAGGAAGCCCGGATCGCGTCCCTCACCACCACCTACCCCCCGGAGACATTCAGCCAgTCAGATGGCCCAATGCTGGTGGCAGAGGCGGATCCCTCTTACAGGCTCGACACCACTGGACCAGTGCCTAGGATTATCCCAGGTCCAGCTGCACAGGCTGTGGCTGACTTGGAGGACGACAGTGGAGAGGAGGAGTTCCTGGAGCAAGCTCCTATAACACAGTGGGAGGAAGCAGAGGTAGCGTCGCTCACCACCAACCTTCCACTCGGAGACATCCAGC
>XM_022671188.1
ATGAGCCGGGGACGCTCTGACCGGCGATGTGCACGAGTTTCAGCAGCGCCTGCTGGACCCAGAGACAAAAACATGGACCAGAACCCAAATACTGGGACGCTTCAGCTGCTGGAAAAACAGTTTACAAgtacaggaggaggaggaggaggttcaGATAGAGAGAGGCTGAAGgttACTGTAGCGGCTGAGGGAGCTCACCGGTCAGGTATGGATCCCCAGTGGAGGAGCGAACCTCTTCCAATAGTGGCGCAGTCAGGAGACTTTTCTTTCAGGACTCGTCCTGTGTCTCCGTGGCAGGGTGATGAGCCAGCCGCCTGGGAGGAGCCCCCGCCGTGTCAGCCCGGGTCTCTCGAGATGAAGCGGCGGGCCCACATTAAGATGTGGATAGAAGGTCAGCTGGAGGGACTCCTGCCCACCTCCCACCCAGAGTCTCCATTGCCTTCAACCACACCTGCAAGGTATGGCTGCAAGACTCTGGTGGCGATTGCGGAGGCAGAACCCTGGAACAGGCTGAACACTGCTGGTCCAGTTGCACAGTGTGAGGAAGCCCGGATCGCGTCCCTCACCACCACCTACCCCCCGGAGACATTCAGCCAgTCAGATGGCCCAATGCTGGTGGCAGAGGCGGATCCCTCTTACAGGCTCGACACCACTGGACCAGTGCCTAGGATTATCCCAGGTCCAGCTGCACAGGCTGTGGCTGACTTGGAGGACGACAGTGGAGAGGAGGAGTTCCTGGAGCAAGCTCCTATAACACAGTGGGAGGAAGCAGAGGTAGCGTCGCTCACCACCAACCTTCCACTCGGAGACATCCAGCAGTAAGTCACTGCACTATTGCCCATCATTA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90292 False 847 TUCP 0.54 9 26089832 26092089
XM_022671188.1 True 847 mRNA 0.58 10 26080452 26092119

Neighbor

gene id symbol gene type direction distance location
nup107 nup107,LOC107710680,LOC107590859 coding upstream 11060 26043247 ~ 26069392 (+)
LOC103027045 magi2 coding upstream 55035 25704277 ~ 26025417 (+)
LOC103026250 gnai1,LOC107590838,LOC108279833,LOC107386448,LOC100706147,LOC107680033,LOC106609493 coding upstream 471304 25577886 ~ 25609148 (+)
ireb2 ireb2 coding upstream 532784 25531046 ~ 25547668 (+)
wdr61 wdr61 coding upstream 565104 25508880 ~ 25515348 (+)
mdm2 mdm2,LOC107577534,LOC106599688 coding downstream 12638 26104757 ~ 26118299 (+)
LOC111192885 NA coding downstream 1404676 27496795 ~ 27497727 (+)
LOC103045890 LOC108432719 coding downstream 1868598 27960717 ~ 27981189 (+)
tmem138 tmem138,LOC105904230,LOC107561148,LOC107551428,LOC107655161 coding downstream 1933758 28025877 ~ 28031998 (+)
ptn ptn,LOC106609498 coding downstream 2261943 28354062 ~ 28457012 (+)
G66844 NA non-coding upstream 9297 26025980 ~ 26071155 (+)
G66854 NA non-coding upstream 309691 25737387 ~ 25770761 (+)
G66851 NA non-coding upstream 364214 25715976 ~ 25716238 (+)
G66842 NA non-coding upstream 391217 25688404 ~ 25689235 (+)
G66837 NA non-coding upstream 447369 25632793 ~ 25633083 (+)
LOC111192883 NA non-coding downstream 81 26092200 ~ 26093105 (+)
G66982 NA non-coding downstream 61296 26153415 ~ 26153644 (+)
G66987 NA non-coding downstream 105302 26197421 ~ 26198071 (+)
G67028 NA non-coding downstream 364936 26457055 ~ 26461093 (+)
G67059 NA non-coding downstream 704353 26796472 ~ 26797829 (+)
cspg4 cspg4 other upstream 779577 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 1395872 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 1528112 24518622 ~ 24552340 (+)
rpap3 rpap3 other upstream 1697430 24367492 ~ 24383022 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other upstream 2360358 23698152 ~ 23720094 (+)
oaz2 oaz2,LOC108432726 other downstream 2057141 28149260 ~ 28220857 (+)
G67459 NA other downstream 3465017 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 3493857 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 4195416 30287535 ~ 30289624 (+)
G67690 atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 4506482 30598601 ~ 30600595 (+)

Expression


Co-expression Network