G67066


Basic Information

Item Value
gene id G67066
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 26972644 ~ 26973143 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU90425
TGAATATTTGGGAAGAGGTTTATTGAAGGCACTGCTGGTCACTGTACTGATGTGAGGTTGATTAAGATGAGGTAGATGATCCTCTTTAGGTGAGTCCCGTTTTTGGCACAGAGTTTCTAAAAGTTCTTTGTGAAAGTTTTCCAGCAGAAAAATCCTAAAAAAGTGGACACTGCTTTCCCGATATGATTCCTGTATAAAACACCTGCACACTGTAAACCTGTCTAACTCCCACTGTCCTACAACTGATCCTCTTTAATACATGATACAGTACATTTCATACAAAACACTGGACTCTTACAGTTCTGTCTTTATATAGAAAACTATGCTCAGTCCAAATATTCagaacaaatataaacaatgttttattatactTCTCATTCATGCtactgttcaaaagtttggaatcatTGTTTTTAACAATGTCAAAATACATTTGTTGCAGGTAAACatgcaaaataatttaaatccaATACTAGTTATGTGTAATCTTACAGGTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90425 True 500 lncRNA 0.34 1 26972644 26973143

Neighbor

gene id symbol gene type direction distance location
mdm2 mdm2,LOC107577534,LOC106599688 coding upstream 854345 26104757 ~ 26118299 (+)
slc35e3 slc35e3,LOC107737854,LOC107710682 coding upstream 891513 26072585 ~ 26081131 (+)
nup107 nup107,LOC107710680,LOC107590859 coding upstream 903252 26043247 ~ 26069392 (+)
LOC103027045 magi2 coding upstream 947227 25704277 ~ 26025417 (+)
LOC103026250 gnai1,LOC107590838,LOC108279833,LOC107386448,LOC100706147,LOC107680033,LOC106609493 coding upstream 1363496 25577886 ~ 25609148 (+)
LOC111192885 NA coding downstream 523652 27496795 ~ 27497727 (+)
LOC103045890 LOC108432719 coding downstream 987574 27960717 ~ 27981189 (+)
tmem138 tmem138,LOC105904230,LOC107561148,LOC107551428,LOC107655161 coding downstream 1052734 28025877 ~ 28031998 (+)
ptn ptn,LOC106609498 coding downstream 1380919 28354062 ~ 28457012 (+)
rtcb rtcb coding downstream 2189535 29162678 ~ 29174983 (+)
G67060 NA non-coding upstream 173667 26798469 ~ 26798977 (+)
G67059 NA non-coding upstream 174815 26796472 ~ 26797829 (+)
G67028 NA non-coding upstream 511551 26457055 ~ 26461093 (+)
G66987 NA non-coding upstream 774573 26197421 ~ 26198071 (+)
G66982 NA non-coding upstream 819000 26153415 ~ 26153644 (+)
G67067 NA non-coding downstream 443 26973586 ~ 26974427 (+)
G67072 NA non-coding downstream 35001 27008144 ~ 27061440 (+)
G67090 NA non-coding downstream 203296 27176439 ~ 27192805 (+)
G67103 NA non-coding downstream 232392 27205535 ~ 27213435 (+)
G67110 NA non-coding downstream 355805 27328948 ~ 27330458 (+)
LOC111192916 NA other upstream 880525 26080452 ~ 26092119 (+)
cspg4 cspg4 other upstream 1671769 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 2288064 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 2420304 24518622 ~ 24552340 (+)
rpap3 rpap3 other upstream 2589622 24367492 ~ 24383022 (+)
oaz2 oaz2,LOC108432726 other downstream 1176117 28149260 ~ 28220857 (+)
G67459 NA other downstream 2583993 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 2612833 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 3314392 30287535 ~ 30289624 (+)
G67690 atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 3625458 30598601 ~ 30600595 (+)

Expression


Co-expression Network