G67213


Basic Information

Item Value
gene id G67213
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 28126097 ~ 28132789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU90603
CAAAAtgtcagattatttttttttatctggacaAACcacaaaccattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactactttgttttgttttccctgtCGGTGGATTTTTCCCTGATGTGCGTTAAAGTTGCAGAAGAAATCTTGGTGCCGTATTTGGTGAGACTTCAGAAAAGATGTGCCCAGGTGAAGCCGTGCTTTAAGCCAAGTATCCAAGGAGGtaccattaaaataaaaattaaaaaagcaaaaaactaaaGGTGATGTAGTGGAGAGGTGCACTGTGAGGGTGAGAGAAGGGAAAAAAGaagtgattgtttttttttttgttcctcacATCAAGCTCGCTTTAGTTAGATTCAGTTAAGAGAGGTAAAGAGGGACCCAGGTCGGATTTAAAGGTGGAGATGAGCGCAGCTCCTCTGTCTCCTCATTCGCTGATCGCTCCTAATAAAGCTCCGAGCCCGAAAGTGCCG

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006812 cation transport biological_process
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU90603 True 478 lncRNA 0.39 2 28126097 28132789

Neighbor

gene id symbol gene type direction distance location
tmem138 tmem138,LOC105904230,LOC107561148,LOC107551428,LOC107655161 coding upstream 94099 28025877 ~ 28031998 (+)
LOC103045890 LOC108432719 coding upstream 144908 27960717 ~ 27981189 (+)
LOC111192885 NA coding upstream 628370 27496795 ~ 27497727 (+)
mdm2 mdm2,LOC107577534,LOC106599688 coding upstream 2007798 26104757 ~ 26118299 (+)
slc35e3 slc35e3,LOC107737854,LOC107710682 coding upstream 2044966 26072585 ~ 26081131 (+)
ptn ptn,LOC106609498 coding downstream 221273 28354062 ~ 28457012 (+)
rtcb rtcb coding downstream 1029889 29162678 ~ 29174983 (+)
commd9 commd9 coding downstream 1305772 29438561 ~ 29441531 (+)
LOC103033872 NA coding downstream 1367938 29500727 ~ 29503311 (+)
LOC103030285 NA coding downstream 1694690 29827479 ~ 29832721 (+)
G67218 NA non-coding upstream 16211 28109476 ~ 28109886 (+)
G67207 NA non-coding upstream 79884 28044402 ~ 28046213 (+)
G67177 snx1a,LOC108432718,LOC108274727 non-coding upstream 183237 27938791 ~ 27942860 (+)
G67176 NA non-coding upstream 190072 27916858 ~ 27936025 (+)
LOC111192886 NA non-coding upstream 197427 27927950 ~ 27928670 (+)
G67224 NA non-coding downstream 29802 28162591 ~ 28163325 (+)
G67225 psma4,LOC105018690,LOC104929549,LOC107680153,LOC107562288,LOC107560014 non-coding downstream 90318 28223107 ~ 28229505 (+)
G67278 NA non-coding downstream 179498 28312287 ~ 28312550 (+)
G67279 NA non-coding downstream 190932 28323721 ~ 28324106 (+)
G67318 NA non-coding downstream 593794 28726583 ~ 28729171 (+)
LOC111192916 NA other upstream 2033978 26080452 ~ 26092119 (+)
cspg4 cspg4 other upstream 2825222 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 3441517 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 3573757 24518622 ~ 24552340 (+)
rpap3 rpap3 other upstream 3743075 24367492 ~ 24383022 (+)
oaz2 oaz2,LOC108432726 other downstream 16471 28149260 ~ 28220857 (+)
G67459 NA other downstream 1424347 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 1453187 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 2154746 30287535 ~ 30289624 (+)
G67690 atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 2465812 30598601 ~ 30600595 (+)

Expression


Co-expression Network