G67436 (commd9)


Basic Information

Item Value
gene id G67436
gene name commd9
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 29440633 ~ 29441428 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU90929
gtcatgacAGTCAGTGCTGCCCTGGCAAtcacatatataaaaaacacatactgtatttgtatACATGATTGTGGCACAGTATTAGCAATAATGGGATTTTATAATGGCAGAGGACAAATTCCCCAAAACCTTCATGTTAGGATCCCTAGACTATTGTTTAAATCTCTGTTGATTTTTTTCACTTGAAAATGTAGTCctgctttaaaatgctttagtCTTGGTTTTGTGGCACATGCACTCAAACAGGGTGATCAGATACGGGCTTGATTAACAGTTAACTACTAATTAAACTGGTAAATTGTGGACTTTTCTACAAAATGTCTGATTGGGTCTATTTTCCAGCCACAGCGGACAGCTGGTCTCGGATGCGGCCCAGGCCATCCAGCATGGTGTCCAGAGTTTCTTTGCTCAGCTCCACAGTGACTGAAGAGTCACAAGCACTGCCACTCATACAAGGTGAATCCTGGATCTTCATGTGCAAAATACAAGTAGGCACAGCCATGCGGCTCACTGAGTCTGAGGCCGTCTTCATGTCCACCCTCCACTCCATGTCTACAAGCTGTGGCAAAGAAATCTGACTGGCCAAAGCATCATTTCGC

Function

symbol description
commd9 Orthologous to human COMMD9 (COMM domain containing 9).

NR:

description
COMM domain-containing protein 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90929 True 599 lncRNA 0.43 3 29440633 29441428

Neighbor

gene id symbol gene type direction distance location
rpl18a rpl18a coding downstream 6542 29430600 ~ 29434091 (-)
LOC103035781 LOC103035781,LOC108438138 coding downstream 207213 29217916 ~ 29233420 (-)
xpot xpot,LOC107662216,LOC107658760 coding downstream 241514 29177672 ~ 29199119 (-)
fbxo7 NA coding downstream 288909 29141011 ~ 29151724 (-)
chrm2 chrm2,LOC108427087,LOC107561244,LOC107658987,LOC107707993,LOC107568718,LOC107662193 coding downstream 859948 28483128 ~ 28580685 (-)
ptdss2 ptdss2 coding upstream 32674 29474102 ~ 29492350 (-)
LOC103033560 LOC108438141 coding upstream 88269 29529697 ~ 29545377 (-)
LOC103033237 ifitm5,LOC103033237,LOC108438128,LOC107559973,LOC107736613,LOC107577508,LOC107680123,LOC108274514 coding upstream 105175 29546603 ~ 29550361 (-)
cat cat,LOC107573156 coding upstream 138892 29580320 ~ 29592259 (-)
syt12 syt12,LOC107680125,LOC107573158,LOC107559999,LOC107673296 coding upstream 154061 29595489 ~ 29619068 (-)
G67339 NA non-coding downstream 283439 29155695 ~ 29157194 (-)
G67335 NA non-coding downstream 292659 29146955 ~ 29147974 (-)
G67325 NA non-coding downstream 691421 28748886 ~ 28749212 (-)
G67321 NA non-coding downstream 711462 28726583 ~ 28729171 (-)
G67310 NA non-coding downstream 787129 28652959 ~ 28653504 (-)
G67500 NA non-coding upstream 60176 29501604 ~ 29503311 (-)
G67517 NA non-coding upstream 125331 29566759 ~ 29567758 (-)
G67529 NA non-coding upstream 220585 29662013 ~ 29662676 (-)
G67537 NA non-coding upstream 277801 29719229 ~ 29724088 (-)
G67566 NA non-coding upstream 494277 29935705 ~ 29935944 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other downstream 1307845 28121260 ~ 28132788 (-)
tmem258 NA other downstream 1404672 28032701 ~ 28035961 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 3909653 25516515 ~ 25530980 (-)
G66642 NA other downstream 4778731 24660024 ~ 24661902 (-)
G66619 NA other downstream 4932352 24507834 ~ 24508281 (-)
fuk fuk other upstream 1928 29443356 ~ 29467227 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 1156940 30598368 ~ 30600908 (-)
G67755 NA other upstream 1361282 30802710 ~ 30805567 (-)
G67830 NA other upstream 1534449 30975877 ~ 30992883 (-)
tmem60 tmem60 other upstream 1639352 31080780 ~ 31091017 (-)

Expression


Co-expression Network