Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000010_03017924_03021246 |
| gene name | FAM78BA, FAM78BB, FAM78B |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000010 |
| NCBI id | null |
| chromosome length | 12265998 |
| location | 3017216 ~ 3022870 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| fam78ba | Is expressed in heart. Orthologous to human FAM78B (family with sequence similarity 78 member B). |
| fam78bb | Orthologous to human FAM78B (family with sequence similarity 78 member B). |
| fam78b | Orthologous to human FAM78B (family with sequence similarity 78 member B). |
| id | name | namespace |
|---|---|---|
| GO:0005575 | cellular_component | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000010_03017924_03021246.mRNA | False | 3118 | mRNA | 0.42 | 2 | 3017216 | 3022870 |
| TU70363 | True | 272 | lncRNA | 0.36 | 1 | 3021696 | 3021967 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000010_02847074_02911612 | NA | coding | upstream | 105604 | 2847074 ~ 2911612 (+) |
| CI01000010_02821021_02827050 | NA | coding | upstream | 189999 | 2821021 ~ 2827217 (+) |
| CI01000010_02805903_02806462 | NA | coding | upstream | 210373 | 2805662 ~ 2806843 (+) |
| CI01000010_02734548_02755209 | RFX2 | coding | upstream | 261425 | 2734548 ~ 2755791 (+) |
| CI01000010_02726989_02731906 | NA | coding | upstream | 284855 | 2726552 ~ 2732361 (+) |
| CI01000010_03116123_03125761 | EDEM3 | coding | downstream | 93253 | 3116123 ~ 3126609 (+) |
| CI01000010_03142808_03164874 | CLG10H1ORF21 | coding | downstream | 117774 | 3140644 ~ 3165257 (+) |
| CI01000010_03172010_03192359 | COLGALT2 | coding | downstream | 149140 | 3172010 ~ 3192795 (+) |
| CI01000010_03197380_03199958 | NA | coding | downstream | 174510 | 3197380 ~ 3200044 (+) |
| CI01000010_03236941_03246548 | NA | coding | downstream | 214071 | 3236941 ~ 3247594 (+) |
| G61779 | NA | non-coding | upstream | 9904 | 3007089 ~ 3007312 (+) |
| G61774 | NA | non-coding | upstream | 15732 | 3001269 ~ 3001484 (+) |
| G61769 | NA | non-coding | upstream | 22076 | 2994902 ~ 2995140 (+) |
| G61763 | NA | non-coding | upstream | 31072 | 2985762 ~ 2986144 (+) |
| G61762 | NA | non-coding | upstream | 31614 | 2985383 ~ 2985602 (+) |
| G61784 | NA | non-coding | downstream | 1095 | 3023965 ~ 3025452 (+) |
| G61444 | NA | non-coding | downstream | 8887 | 3031757 ~ 3042482 (+) |
| G61409 | NA | non-coding | downstream | 32304 | 3055174 ~ 3087016 (+) |
| G61826 | NA | non-coding | downstream | 178769 | 3201639 ~ 3232879 (+) |
| G61835 | NA | non-coding | downstream | 249924 | 3272794 ~ 3273005 (+) |
| CI01000010_00946586_00947327 | NA | other | upstream | 2069672 | 945182 ~ 947577 (+) |
| CI01000010_00881905_00883563 | NA | other | upstream | 2133702 | 881195 ~ 883684 (+) |
| CI01000010_00826648_00831638 | NA | other | upstream | 2178784 | 826648 ~ 832705 (+) |
| CI01000010_03320340_03346243 | NA | other | downstream | 290825 | 3313695 ~ 3347796 (+) |
| G62838 | NA | other | downstream | 867225 | 3890095 ~ 3893793 (+) |
| G62856 | NA | other | downstream | 914887 | 3937757 ~ 3939945 (+) |
| G62983 | NA | other | downstream | 1425302 | 4448172 ~ 4449327 (+) |
