snupn (snupn,LOC107673280,LOC107738646)


Basic Information

Item Value
gene id snupn
gene name snupn,LOC107673280,LOC107738646
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 25378437 ~ 25387120 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228547.3
GGCGTGGTGACGCAGCCGGGCGGAGGGAGATGTGAGCGGGCTCCAGACACAcactcctgctgctgctcctgcggTGATACTGACACACTCCGCCGCCTCCACAACACAAGCCCTGATGGATGCCCTGACCCAGGCTCTCTCCTCCAGCTTCTCTGTATCTACAGAAGCCAACAGCACGGCTGCCCCTCACCCCCGCCTGGCTCAGTATAAGGGCAGATACAGCGCTCTGGAGCAGAATGAACGGCGCAGGAGATTCCTGGAGCAACAGAAAGAGAAAAGGCTCAACTATGTGAATCACGCCCGCCGTTTGGCAGAGGGGGACTGGACGGGGGCAGACAGTgatgaggagcaggaggagaagACTCAGAAGAACCAGCAGCAGGATGAGGcagaagatgaggggatggagGTTGAGCAGCGGAAAAAGTTGCCAAAGCATTACGCCAACCAGCTGATGTTGTCAGAGTGGCTGGTGGATGTGCCTGCGGATCttagttctgattggctgctggtgGTCTGTCCTGTTGGCAAGCGCTCTCTTGTTGTTGCATCTAAGGGTTCCACTGCATCGTACACTAAAAGTGGGTACTGTGTAAATCGTTTTCCTTCTTTGCTACCTGGAGGGAACAGACACAACTCAGCCATGGGGAAAGATTACACCATCCTAGACTGCATTTATAGTGAAGTGGACAGAACCTACTATATCCTGGATGTAATGTGCTGGAGGGGGCATCCGGTATATGACTGCCCTACAGAGTTCAGGTTCTACTGGTTGCAGTCTAAGGCTGAAGAAGTGGATGGACTATCAGAGGTTGCCAAACGGAACCCTTTCCGTTTTGTTAATTTGAACAGTATCAGCTGCTCAACAGAATCCATTCAAAAGGCCCTGGCCCATGACTACAGCTTCAGCGTGGATGGCCTACTTTTCTACCACCGTGAGACTCATTACACCCCTGGAAGCACCCCTCTAGTAGGCTGGCTCAGGCCCTACATGGTGGCAGACATCTTAGGCATTGAGGTGCCACAGTGTCCTCTTACCACTAAGCCTGACTATGCCTGTCATCAAATGCAGCAGATCCGGGAGCACAAGAAGACGTCCACTGAGGTTCGGCCTGCAGAGAACGGCAGATATGAGTTAGAGCATCTCTCCACACCAGAGAACCAGACAACAAATAGCAACCAGAAGGAGCGCATGGAATCCTGATGTGTGTAGAAGCCTGACTGTAAGTTCTTTAAGCCCAGCATTTTGGAGATCCACTGAGAAGTTGTGGATTTGACAGACTGGGGTTTGAGGATTTGTGGCTTACGCTGTTCTGGGGATTTTGGACTGTTAAGTTAAAGCTAGCTAGATAATGGAATGAAGCTGGTTCCAATGAATGACTGGTTTCTAGCAAACTTTTGCAAGCATGTTCACCACCAGTTTTTTGTGACATCCTCAGAACAAGGAAATAAGATGCAGGCTTTAGTTCTACACAGTATATTTCCATGGAGTAAGCCTGTACAGTACTGCTTAATTTTAAAGAGGCTGTTTGGTCATGTCTGATTTTTCACTTTCCTTCAGTGGTGTTCCAAAGACAGATTTCACCTTACCAATTGTGTCTGTGCTTCAGAGCTGCACTAAACCATTTTGTTCAATATATGCAGTACTCTTCAGATCTATACATATTATGAAAACTATTATTTGAAGTAATTGCTACCACATAATTTTCATTCATAAACTACATCTGAAGGAAGTGGACCAAAAGCAAAAGCATTCATCGAGCGTCTTTTGATGAATGCTTTTACTgatcattgttatattttagattagcTTTTAAATTGAGGGTCTGTATGCCAAACTAGAACATTTCTGAAAACTGAAGAAAGTTTGAGTTTGGTACTTTTAAGTATGACATGTTTTGTATGCcttgttaataaattaattttacttatgttgaaatg

Function

symbol description
snupn Predicted to enable RNA binding activity and nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus and snRNA import into nucleus. Predicted to be located in cytoplasm and nucleus. Orthologous to human SNUPN (snurportin 1).

NR:

description
snurportin-1 isoform X1

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0061015 snRNA import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004484 mRNA guanylyltransferase activity molecular_function
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K13151 SNUPN, RNUT1; snurportin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228547.3 True 1941 mRNA 0.47 9 25378437 25387120

Neighbor

gene id symbol gene type direction distance location
LOC103033942 LOC103033942,LOC108442313 coding upstream 818815 24555601 ~ 24559622 (+)
LOC103034593 LOC108442311 coding upstream 861081 24510489 ~ 24517356 (+)
LOC111192915 NA coding upstream 917436 24459403 ~ 24461001 (+)
lrig3 lrig3,LOC104942525 coding upstream 1058371 24296917 ~ 24320066 (+)
LOC103023565 fam19a2,LOC103023565,LOC108411383,LOC108248567,LOC106529719,LOC103364248 coding upstream 1260724 24026461 ~ 24117713 (+)
ptpn9 ptpn9,ptpn9a,LOC107727494,LOC107673262,LOC107560010 coding downstream 7315 25394435 ~ 25423664 (+)
sin3a sin3a coding downstream 39617 25426737 ~ 25449256 (+)
wdr61 wdr61 coding downstream 121760 25508880 ~ 25515348 (+)
ireb2 ireb2 coding downstream 143926 25531046 ~ 25547668 (+)
LOC103026250 gnai1,LOC107590838,LOC108279833,LOC107386448,LOC100706147,LOC107680033,LOC106609493 coding downstream 190766 25577886 ~ 25609148 (+)
G66718 snx33,LOC107680142,LOC107560006,LOC107673279 non-coding upstream 37981 25335335 ~ 25340456 (+)
G66714 NA non-coding upstream 43995 25328781 ~ 25334442 (+)
G66712 NA non-coding upstream 71454 25306619 ~ 25306983 (+)
G66710 NA non-coding upstream 118864 25258379 ~ 25259573 (+)
G66698 NA non-coding upstream 205466 25172631 ~ 25172971 (+)
G66739 NA non-coding downstream 91740 25478860 ~ 25519547 (+)
G66748 NA non-coding downstream 173374 25560494 ~ 25561181 (+)
G66755 NA non-coding downstream 183718 25570838 ~ 25572159 (+)
G66756 NA non-coding downstream 188735 25575855 ~ 25576194 (+)
G66833 NA non-coding downstream 225766 25612886 ~ 25614889 (+)
cspg4 cspg4 other upstream 77562 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 693857 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 826097 24518622 ~ 24552340 (+)
rpap3 rpap3 other upstream 995415 24367492 ~ 24383022 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other upstream 1658343 23698152 ~ 23720094 (+)
LOC111192916 NA other downstream 693332 26080452 ~ 26092119 (+)
oaz2 oaz2,LOC108432726 other downstream 2762140 28149260 ~ 28220857 (+)
G67459 NA other downstream 4170016 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 4198856 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 4900415 30287535 ~ 30289624 (+)

Expression


Co-expression Network