LOC103029290 (prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933)


Basic Information

Item Value
gene id LOC103029290
gene name prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6139962 ~ 6144208 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229721.2
AACTCTGGCCACTTTAAATAGCTGCCCAACCCTCTGCTGCACCACGTTCACCACAGAACTTCCAGAATGTCTAGGAACCGAACACAAGCCATGCTCTTCGTGGCGCTGCTGTGCCTGGACCTGCACGCCCGGGTGGGTTCTGCGCCCATCTGTCCTCACGGGCACACCGGCTGCCACATCCTATCTCTAGCTGATCTCTTCGACAGGGTCATCCAGCACTCAGCCAGAATGCACGGGCTCTCCAGCGATCTGCACTCTGAGTTTGAACAGTACTTCCTTCCCAGCAAAAACCACATCAGCAGAGTGTATCGCAAGTGCCACACATCCAACATACTGACTCCTAATGGCAAGGAGAATGCACAGAAACTGGCTcGTGAAGAGTTGACAGAGGTAATCATGAAGCTGCTAATGGCCTGGAGGGACCCCCTGTCCCAACTGCACCAGAGCATGGCCCATCAGCAGGACTTCAACAGCTTCAGCAGCAATAAAGCTCTAGAGATGAGTGACATGGTGCATGAGCTCAGGAAAGGAGTGGAGAAAGTTACAGAAAAGATGCAGCTTCTGGGGATGATCAGTAACTCAGTGAGTGGCCTCTCGTCTCCTGAAGCTCTGCTTCCAGCCTCTGAAAGTGGAGAGGCCTTGAGCGACTATGAGCTGCTCTACTGCTTCCGCCGAGATTCGGACAAAGTCCAGAACTACTTGAAGATCCTTAAATGCAGAATTGTACCCGAGCACGGCTGCTGAGGATCACTTTCCTGCACTGCTGGACTGCACCACATGTGCTCGGTGCACTTCATATATCACGGCGGTTCTTGATCTTCCACCAGTTATGTCTACAGCTGATTCCCAATGAAGGATGAAAAGAaggagcctgttttttttttttttatttggagccACAGCTTGTTTGTCTTTATTAGGATACGGTTAGGCTATAAATTGTTCCGAACATTAAAACAGTTCAtgaaaaaacaaggtaaaatatCAGTTAGAATATCGTTACTAATAGTGGCACATCATCCAAGTTTAATAAATAGCATTG

Function

symbol description
prl2 Predicted to enable hormone activity. Predicted to be involved in positive regulation of receptor signaling pathway via JAK-STAT and response to nutrient levels. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; eye; gill; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in carotid artery disease. Orthologous to human PRL (prolactin).

NR:

description
PREDICTED: prolactin-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05439 PRL; prolactin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229721.2 True 1042 mRNA 0.49 5 6139962 6144208

Neighbor

gene id symbol gene type direction distance location
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding downstream 20196 6096340 ~ 6119766 (-)
abcc9 abcc9,LOC108439416 coding downstream 413679 5664901 ~ 5726283 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding downstream 476681 5658448 ~ 5663281 (-)
cmas NA coding downstream 486939 5644509 ~ 5653023 (-)
LOC103037729 LOC108442307,LOC107676911,LOC107583751 coding downstream 645311 5456709 ~ 5494651 (-)
LOC111192868 NA coding upstream 577894 6722102 ~ 6723530 (-)
LOC111192905 NA coding upstream 590949 6735157 ~ 6736574 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 706960 6851168 ~ 6855742 (-)
LOC103043330 NA coding upstream 786955 6931163 ~ 6955225 (-)
tfec tfec coding upstream 1317619 7461827 ~ 7533411 (-)
G62272 NA non-coding downstream 124259 6014004 ~ 6015703 (-)
G62237 NA non-coding downstream 172245 5928492 ~ 5967717 (-)
G62244 plxnb2a,LOC108439415,LOC108279839,LOC107587155,LOC107725571 non-coding downstream 189957 5948198 ~ 5950005 (-)
G62217 NA non-coding downstream 378129 5759463 ~ 5761833 (-)
G62210 NA non-coding downstream 407775 5731028 ~ 5732187 (-)
G62307 NA non-coding upstream 14049 6158257 ~ 6159938 (-)
G62354 NA non-coding upstream 191315 6335523 ~ 6335771 (-)
G62361 NA non-coding upstream 210595 6354803 ~ 6355105 (-)
G62363 NA non-coding upstream 214453 6358661 ~ 6363880 (-)
G62375 NA non-coding upstream 229487 6373695 ~ 6374194 (-)
G61942 NA other downstream 1517385 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 1713806 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 2293493 3840601 ~ 3846469 (-)
G61676 NA other downstream 2481694 3650845 ~ 3658268 (-)
mdm1 NA other downstream 2591260 3529520 ~ 3548702 (-)
G62377 NA other upstream 230261 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 488802 6633010 ~ 6695389 (-)
G62484 NA other upstream 527402 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 583666 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 643134 6787342 ~ 6859670 (-)

Expression


Co-expression Network