arfgap3 (arfgap3,LOC108279714)


Basic Information

Item Value
gene id arfgap3
gene name arfgap3,LOC108279714
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8447310 ~ 8462554 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229837.3
actgagtgcCAGTTGTTTGAGTGTTGACGCTGAATGCGGAAGGCGAGGCGGATCAGGACAGCGGTGTTTGTGGCTGTGTTCACTTCAACAGGTGGAAAAGATGACAGAACCGAGCAAGCAGGACATTTCCGCCATTTTCAAGCGTTTACGCTCCATTCCTACTAATAAGGCCTGTTTTGACTGCTCTGCCAAGAACCCCAGCTGGGCCAGCATCACATATGGAGTGTTTCTGTGTATCGACTGCTCAGGGACGCATCGTTCTCTGGGAGTGCACCTATCTTTTATCAGGTCTACTGAACTGGACTTCAACTGGTCCTGGTATCAGCTGCGCTGCATGCAGGTTGGGGGAAATGCCAGTGCTACTGCCTTTTTTAACCAACATGGTGGAACTGCAGGTGCAGCTAATGCAAAGTATAACAGCCGAGCAGCCCAGCTTTACCGAGAGAAGATAAAGACTCTGGCAACCCAAGCCACCCGCCAGCATGGCACAgagCTGTGGCTGGACAGTCAGGCTCCTCTGTCCCCCACATCTCCTGGAGACAAGCATGAAGACTTTTTTGCCCAGCACACACAGGATGATGGAGGCTTTCTCCAGCAAAAACTGAATCCACCACAGGAGACAGTGAGGCAAGACAACAACAATAATGATAACAATGAGGAGGGCCCTTCTGTTGAACTCCTCAGTGTTTCTCCGAAAGCTGCTTTAGCTGAACATTCTCTAATCAAAAAGAAGCCACCGGCAGCTAAGAAAACGCTGGGCGCTAAGAAAGGAGGCCTGGGGGCTCAGAAGGTGAGCAGTCAGAGTTTCTCAGCTCTGGAGAAGAGAGCACAGGCTGTGGACAAACTGCGAGAAGAGGCAGCAGCAGAAAAGAGTGCAGAACCTGAACAACCAGTCGTGTCCTCTTTGCGACTGGCCTATCAGGATCTGGAGCtgcagaggaagagagatgaGGAAAAGCTGCGAGGGCTGGAGGGGAAGAAGAAGGAGCAGGCTGAGAGGCTGGGGATGGGCCTGGGCAGCAGGGCTGGAGTCTCTCACTCTGTCCTATCAGACATGCAGACCATTCAACAGGAGACGCCCACTGTGTCTCACTCCTCCTCTCGCTCAAGGAAATACAACAATGACGAGGACGAGGAGGAAGCTGGCTTTTTCTCCATGAGGAGCTCCTCCAGGTTTATGGACGATGCACCTCAGTCTTCAGATCAGTTCTTCTCCCAGTGGGGAGACATCAAGAAGAAGGAACCAAAGAAACCAGAGCCCGATTTCTACCTGAGCTCCAAGAAGTCTTCATATGAAGAGAGGAGCACATCAAGGAGGAAGTCAGACCACAGTCCTGTAGCAGTCTCAGATGATGCCCAGAAGAAGTTTGGTGATGCCAAAGCCATCTCCTCTGACATGTTCTTTGGTAAACAGGACAGCTCTGAGTATGAAGCAAGAACCCGACTGGAACGTTTTTCTGGCAGTTCAGCCATCAGCTCAGCAGATCTGTTTGATGAGCAGAAGAAGCAGACAGCTGGCAGTTCCTACAGTATAAGCAATGTGCTGCCCAATGCTCCAGACATGTCTCAGCTGAAGATGGGTGTGCGCTCTGTGGCTGGCAAGCTGTCAGTCATGGCTAGTGGTGTGGTTTCCTCTatacagGATCGCTACACATGAGCATTTATTCAGAGTTTCCAGAGGGGGCAACCTCCCTGCATAATGAAGAGATACTGTATGTTCAAACATGTAGGTCACAACTGCATTACAATCAAATATGATGCATATATGTAGCTTTATGCATTGGTTATGCTGAAGGCCATTCATTGGCTAGGTTCCAGCTCTGTTCAGGAGCTATCTGAAGGACAGGCTTTGCTGTTGTTTAAACTTGAAAAGCTTTTTTTGCTATGCGTTTGCAGAAGAAATGATTGAGCTGGTATTGTGGgaactttttgattttttttttgttgttgtttttgtaaataatttattgatTGTTTACATGTTTCTCAATTTGTTATATGtgcattatagcttacagttcTAGAGTAATCTGGTGATAAAGGGATCTTTATGGAATTGAATAGCCTTAATTTCGTAAGTGCTCTTATCTATACAGTGGTCTGTAGATCACTGAAGACCAAATTTCAGTAAGAGACTGCCACTTATTTAGTGCTGTTCACTTCTGATTTGTAGAAATGCTGCATGGGACTTCAAAGCACAAAAAGTAGATCACATATGTGGTTCATATTATCCTACGGAATATTATGTCAAAGTTTATGTAAATATGTTAGCACTATGTTTGTTTGGAAATGTGTGGGTTACTTTTGtgctatttaaatttaaataagtcACTTAAAAAAGCTGAAATGCATTGTGCTGAATATAGTACACAATCAGTTCAGTACCACTAGGTGGTGGTATCAACAGCAGTTTATTACACCAAAATTGATGTGACACGTTTTTATCAAAGACACAAAAACTTGTATCTTCAAAATGGCATATTTACCTAGAACGAAAAAATCTCCCTGAATTTCATTGGAAGTCTATGTTATAAAGGATTTCGACACAGTGTAATTCTGACACAGTGTACATAATAACTGTAATAGcgattatattttagatatatgAGTTTAAACAGCATCTTATTTTAGGCAGCACTCGGTTTAGAGCAGTTCATTACCATATTTTACGGAATAATAATACGGCACACCAAATTATAATGCTTATTATCAATGAACGtccattttctggtctattttcatacatcagGGAAACTTAGATAAAGTAAATGCctcccaacagcgctacactgagaaaccctgtaTTCCAGTAAGTCAGGGcgatatcagctagcagttcgccaacgtagcttgttttaattaggtaaacacacaggctacaggctgatatacttacctctgatcagtttatttacattaagcttagatttccaataattTCAACAGTGTGTTGgtgataatataaaaaagtaaaaaaaaaaaactatgtcctattttaaccacatttttgGGTCATATTTTGGAcatgaatgttttaaaaagtcaCTGTAGTGCAGAATTGCAATGCATTGTGTTGTGCTACATATGTTGGAGATTATATGGTGGAAATTGCACCTTCGGTGGAGTACACTAGGTGGGGCTGTTTACAGTTAGTTATACCAAAGTTGATGAAGCTTTTTGTCACTGTCATGCTAAAAACTTCTATCTCTCATAttgaaactttacaggagatgGAATGAACTTTAACTTTCAGTGAAaatcaatgaaaaacattttcagttttCAAAGAATGACTGCCAGATGCAAAAATGGAAGTGGCAAAATGGAGATGCACGTTTTTTTGTGACAGTGATAATGTTAAAAtccaattttaaaaagtcacttTAACAAAGCTGCAGTGCAGAAATGCAAGGTGTGGATCATTTTAAGGAAGTAAAATTGCACTTTTCCATAGGTAGCACTAGGTGGTGgtgtttattcagtttattacaCCAAAGTTGATGATAAATTTGGGtataattttgtacattttgccgTTTGTTAGTTGAGGAAGTTGCTGGTCTATAAGAGATCTTAAGCTTTggatgaaaaacacacacagagaaaccaTAGCTAAACTTTGGTGTAAATATTTCCAGTCATACATTTTTCCTGCTTCATATCTCTGGTTTATATTGATAGATTTTGCCATTGATTTACAGGGGCAGCTTTTGcttggctttattttttatgcactACAGAATTATTGTTACAAATGGTAGATGCAAATTATACCTATATATAGATAAACAATGTATCACATTGTGTACACTTTATGCTGAAATGTTGACAGAGCTGAAATATAATGAAAGCAGTATGTAGAACCAAACCAGTCATTTCTTCTAAGAAGAAAAactaaaagactaaaaaaaatttaaaagttaTAATTTAGCAGCCTTAATAGTTTCAACTCATATGTTTTGTGTTCAGTCTAGCAGCCCATTAggtctgttaaaaaaaactgcatttgcACTACGTTGAAAAGATTTTTGCATTTAGAAAATCTAGTgatgatatataattataaaagtcATAATGTAAAGGGAACATACACATGTGCTAagactaaataaagaaacattcATTGTTGAAAAGTC

Function

symbol description
arfgap3 Predicted to enable GTPase activator activity. Predicted to be involved in COPI coating of Golgi vesicle. Is expressed in hatching gland and polster. Orthologous to human ARFGAP3 (ADP ribosylation factor GTPase activating protein 3).

NR:

description
PREDICTED: ADP-ribosylation factor GTPase-activating protein 3 isoform X2

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229837.3 True 4136 mRNA 0.41 16 8447310 8462554

Neighbor

gene id symbol gene type direction distance location
terf2 NA coding downstream 3022 8415862 ~ 8444288 (-)
cct2 cct2,tcpb coding downstream 46407 8389780 ~ 8400903 (-)
LOC103036771 LOC103036771,LOC108425308 coding downstream 58035 8381497 ~ 8389275 (-)
dgki dgki,LOC108425370 coding downstream 86002 8269640 ~ 8361308 (-)
LOC111192944 NA coding downstream 183561 8253845 ~ 8263749 (-)
LOC103038884 pacsin2,LOC103038884,LOC108279716 coding upstream 1572 8464126 ~ 8496393 (-)
ttll1 ttll1,LOC102779306 coding upstream 35670 8498224 ~ 8507579 (-)
LOC103041774 NA coding upstream 79916 8542470 ~ 8553565 (-)
LOC103042080 LOC108425318 coding upstream 124714 8587268 ~ 8590316 (-)
LOC103045460 NA coding upstream 708437 9170991 ~ 9192565 (-)
G62858 NA non-coding downstream 12914 8433715 ~ 8434396 (-)
G62832 NA non-coding downstream 113987 8332508 ~ 8333323 (-)
G62821 NA non-coding downstream 167316 8277685 ~ 8279994 (-)
G62748 NA non-coding downstream 495876 7949835 ~ 7951434 (-)
G62732 NA non-coding downstream 636528 7810553 ~ 7810782 (-)
G62907 NA non-coding upstream 184331 8646885 ~ 8647296 (-)
G62950 NA non-coding upstream 557935 9020489 ~ 9020985 (-)
G63034 NA non-coding upstream 943851 9406405 ~ 9409548 (-)
LOC103022044 NA non-coding upstream 952489 9415043 ~ 9418822 (-)
G63041 NA non-coding upstream 1019646 9482200 ~ 9482517 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 273494 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 827878 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 1587640 6787342 ~ 6859670 (-)
G62484 NA other downstream 1709362 6671610 ~ 6737948 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 1156107 9618661 ~ 9622788 (-)
G63217 NA other upstream 1852245 10314799 ~ 10411231 (-)
G63516 NA other upstream 3858001 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 3902914 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 4343417 12805971 ~ 13027498 (-)

Expression


Co-expression Network