ttll1 (ttll1,LOC102779306)


Basic Information

Item Value
gene id ttll1
gene name ttll1,LOC102779306
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8498224 ~ 8507579 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229839.3
TGTTTAGGGAAGGGAGGCCTGCCTCCTTTGGTTGCTATGGGCGTCCTCCTAACGCATCCGAGGCAGGGAAGggtaaaatctcctaaaagcgaaaaatacagaataatgtgaaagagacaagagagagaatGCCAGGGGacacattaattaaaacatgAGCCGATTAAAGCTGATAAATTGTTTTAATCCAGCGGTTTGGAGCATCTTTCCTGCCCTGACTCCCGGTTAGCCGCCCAGCTAGCACTGTCCCCCGGCCTGGAGCGGGCTGACCTCAACACCTAAGTTACCCAATGCCAGTCCCACTCTGACATGAGGAGCAGCCATTCTGAAGCCGAGAGGCGCCATGGCTGCTAAGGTGAAGTGGGTGACCGACATAGAGAAGTCTGTACTCCTTAACAACTTTGAAAAAAGAGGATGGATACAAGTGACGGACAGCGAGGACTGGAATTTTTACTGGATGAGTATCCAGACCATTCGGAATGTATTCAGTGTGGATACAGGCTACCGCTTGTCTGATGATCAGATGGTTAACCACTTCCCAAACCACTATGAGCTGACGAGGAAGGATCTGATGATCAAGAACATCAAACGCTACAGGAAGGAGCTGGAGAAGGAGAGCAGTCCTCTGGCAGAGAAAGATGAAAATGGAAAATACATTTACCTGGACTTTGTGCCTGTGACGTTCATGCTGCCAGCAGACTACAACCTGTTTGTTGAAGAATTTCGCAAGAGTCCATCCAGCACATGGATCATGAAGCCATGTGGCAAGGCTCAGGGCAAAGGCATCTTCCTTATTAATAAACTCTCCCAGATCAAGAAATGGTCCAGAGACAGCCGCACTTCCACATTTGTGGCAGCTAACAGTGGGAAGGAAGCATATGTGATCTCACTGTATATTGATAATCCGTTGCTGATTGGCGGAAAGAAGTTTGATTTGCGCCTGTATGTTCTAGTTACAACCTACCGGCCTCTTAAATGTTACATGTATAAACTTGGATTTTGCAGATTTTGCACAGTTAAATACACTCCCAGCACCAGTGAACTGGACAACATGTTTGTGCATCTTACAAATGTTGCAATCCAGAAACATGGGgaTGATTATAATCATGTGCATGGTGGGAAATGGACAGTCAGTAATCTGCGTCTGTATCTGGAGAGCACCAGAGGAAAGGAGGTCACAAACCTTCTCTTTGACCAAATCCATTGGATTGTGGTGCAGTCGCTTAAAGCTGTGGCTATATGGGCATTCCCAAGGCCTCCCCTGAGATTCCACTTCATGATCAATATACATATTACTTACAGTCCTGTAATGAACAACGACAAACACTGCTTCGAGTGCTATGGCTACGATATCATCATTGATGACAAGCTGAAGCCGTGGCTTATTGAAGTGAATGCCTCTCCTTCGCTCACCTCCAGCACTGCGAATGACCGCATCCTGAAGTACAACCTGATTAATGATACTCTCAACATTGTTGCTCCCAATGGTGAGATCCCAGACTGCCGATGGAACCGGAGCCCGCCCAAAGAAGCTCTGGGGAACTATCAAGTCCTTTATGATGAGGAACAAGCCTTGAGTGAGAATGCTGACCTCCGGAGCCGCTCAGGACAGGCCCTGGGGTCCAAGAGCACAAGGTCAAGCAGCGTACGCCCTGTCCCGGCAACCTGGAAGTGAGGTCTTGATGCAAGGCCTTTATAACACCTTTAAAGCCTGTTCTTTCTTATGGTGCAAAAATGGATTGTGGGATCATGGGTACATGCTGGCTTTGACTGATTGTCGAAATGTTCCTGAATGTCCTTAATTGTAGCGAGAATTTACCTACGCACTTTTTGGCATGACATTTATACCGTTTCATCAAAATTTGTTGAAAAAGGCATGGAAAGAAGACTCTCCCTTTTTGCATGACTTTTTCATAGCAGCAAGTCTACTGCTCCATTTTTGCAGATGAAGAAAATGGACAAAGATAATTAAGCAGAAAACAAGCCTTTTTTCTTTATCCTTCCAAATGTGTCGGATTAAACTACTGTCAAAGGATtctgtgttttgtattttctaagAAATATCACTTATTCCAAAATTTTAGATGTATTGTTTGAGGAATGTTTGAGAACTCCAACAAAATATATCCAGACatcttctttatatttattgtttattatgtgCCTCCTGCTCTTCAGTGGTCCGTCTAATTGTGCTACAAGATCTACTCATGTAAAAATGCCAGAGATGATCATAGCACTTTGACCAAAGACAACCTGGCTCCAAAATAACTCATTACATGTCTTCTTAAGATGGACTTGTGCAGCctgatattaattttatttaagcttGCAGAATCACAGATGAAATAAACTTTGGACTAAATGTCTCTGCTCTCTGCTATTGCTGTTTTTACTAGTTTGAGTTtcatcaaaaaatgtaattgggTAGTCAAAGACTACAACCTCAAATCAAGAAATGTTTGTACAGTATAAAATCATTATGATCAGCTGCATTTCAGTTAAGACATTCTAAAAATGTTGTGACAATAAAGCATTTACCACATTG
>XM_007229841.3
TAGGGAAGGGAGGCCTGCCTCCTTTGGTTGCTATGGGCGTCCTCCTAACGCATCCGAGGCAGGGAAGggtaaaatctcctaaaagcgaaaaatacagaataatgtgaaagagacaagagagagaatGCCAGGGGacacattaattaaaacatgAGCCGATTAAAGCTGATAAATTGTTTTAATCCAGCGGTTTGGAGCATCTTTCCTGCCCTGACTCCCGGTTAGCCGCCCAGCTAGCACTGTCCCCCGGCCTGGAGCGGGCTGACCTCAACACCTAAGTTACCCAATGCCAGTCCCACTCTGACATGAGGAGCAGCCATTCTGAAGCCGAGAGGCGCCATGGCTGCTAAGGTGAAGTGGGTGACCGACATAGAGAAGTCTGTACTCCTTAACAACTTTGAAAAAAGAGGATGGATACAAGTGACGGACAGCGAGGACTGGAATTTTTACTGGATGAGTATCCAGACCATTCGGAATGTATTCAGTGTGGATACAGGCTACCGCTTGTCTGATGATCAGATGGTTAACCACTTCCCAAACCACTATGAGCTGACGAGGAAGGATCTGATGATCAAGAACATCAAACGCTACAGGAAGGAGCTGGAGAAGGAGAGCAGTCCTCTGGCAGAGAAAGATGAAAATGGAAAATACATTTACCTGGACTTTGTGCCTGTGACGTTCATGCTGCCAGCAGACTACAACCTGTTTGTTGAAGAATTTCGCAAGAGTCCATCCAGCACATGGATCATGAAGCCATGTGGCAAGGCTCAGGGCAAAGGCATCTTCCTTATTAATAAACTCTCCCAGATCAAGAAATGGTCCAGAGACAGCCGCACTTCCACATTTGTGGCAGCTAACAGTGGGAAGGAAGCATATGTGATCTCACTGTATATTGATAATCCGTTGCTGATTGGCGGAAAGAAGTTTGATTTGCGCCTGTATGTTCTAGTTACAACCTACCGGCCTCTTAAATGTTACATGTATAAACTTGGATTTTGCAGATTTTGCACAGTTAAATACACTCCCAGCACCAGTGAACTGGACAACATGTTTGTGCATCTTACAAATGTTGCAATCCAGAAACATGGGgaTGATTATAATCATGTGCATGGTGGGAAATGGACAGTCAGTAATCTGCGTCTGTATCTGGAGAGCACCAGAGGAAAGGAGGTCACAAACCTTCTCTTTGACCAAATCCATTGGATTGTGGTGCAGTCGCTTAAAGCTGTGGCTCCTGTAATGAACAACGACAAACACTGCTTCGAGTGCTATGGCTACGATATCATCATTGATGACAAGCTGAAGCCGTGGCTTATTGAAGTGAATGCCTCTCCTTCGCTCACCTCCAGCACTGCGAATGACCGCATCCTGAAGTACAACCTGATTAATGATACTCTCAACATTGTTGCTCCCAATGGTGAGATCCCAGACTGCCGATGGAACCGGAGCCCGCCCAAAGAAGCTCTGGGGAACTATCAAGTCCTTTATGATGAGGAACAAGCCTTGAGTGAGAATGCTGACCTCCGGAGCCGCTCAGGACAGGCCCTGGGGTCCAAGAGCACAAGGTCAAGCAGCGTACGCCCTGTCCCGGCAACCTGGAAGTGAGGTCTTGATGCAAGGCCTTTATAACACCTTTAAAGCCTGTTCTTTCTTATGGTGCAAAAATGGATTGTGGGATCATGGGTACATGCTGGCTTTGACTGATTGTCGAAATGTTCCTGAATGTCCTTAATTGTAGCGAGAATTTACCTACGCACTTTTTGGCATGACATTTATACCGTTTCATCAAAATTTGTTGAAAAAGGCATGGAAAGAAGACTCTCCCTTTTTGCATGACTTTTTCATAGCAGCAAGTCTACTGCTCCATTTTTGCAGATGAAGAAAATGGACAAAGATAATTAAGCAGAAAACAAGCCTTTTTTCTTTATCCTTCCAAATGTGTCGGATTAAACTACTGTCAAAGGATtctgtgttttgtattttctaagAAATATCACTTATTCCAAAATTTTAGATGTATTGTTTGAGGAATGTTTGAGAACTCCAACAAAATATATCCAGACatcttctttatatttattgtttattatgtgCCTCCTGCTCTTCAGTGGTCCGTCTAATTGTGCTACAAGATCTACTCATGTAAAAATGCCAGAGATGATCATAGCACTTTGACCAAAGACAACCTGGCTCCAAAATAACTCATTACATGTCTTCTTAAGATGGACTTGTGCAGCctgatattaattttatttaagcttGCAGAATCACAGATGAAATAAACTTTGGACTAAATGTCTCTGCTCTCTGCTATTGCTGTTTTTACTAGTTTGAGTTtcatcaaaaaatgtaattgggTAGTCAAAGACTACAACCTCAAATCAAGAAATGTTTGTACAGTATAAAATCATTATGATCAGCTGCATTTCAGTTAAGACATTCTAAAAATGTTGTGACAATAAAGCATTTACCACATTG
>XM_007229842.3
TTGTTTAGGGAAGGGAGGCCTGCCTCCTTTGGTTGCTATGGGCGTCCTCCTAACGCATCCGAGGCAGGGAAGggtaaaatctcctaaaagcgaaaaatacagaataatgtgaaagagacaagagagagaatGCCAGGGGacacattaattaaaacatgAGCCGATTAAAGCTGATAAATTGTTTTAATCCAGCGGTTTGGAGCATCTTTCCTGCCCTGACTCCCGGTTAGCCGCCCAGCTAGCACTGTCCCCCGGCCTGGAGCGGGCTGACCTCAACACCTAAGTTACCCAATGCCAGTCCCACTCTGACATGAGGAGCAGCCATTCTGAAGCCGAGAGGCGCCATGGCTGCTAAGGTGAAGTGGGTGACCGACATAGAGAAGTCTGTACTCCTTAACAACTTTGAAAAAAGAGGATGGATACAAGTGACGGACAGCGAGGACTGGAATTTTTACTGGATGAGTATCCAGACCATTCGGAATGTATTCAGTGTGGATACAGGCTACCGCTTGTCTGATGATCAGATGGTTAACCACTTCCCAAACCACTATGAGCTGACGAGGAAGGATCTGATGATCAAGAACATCAAACGCTACAGGAAGGAGCTGGAGAAGGAGAGCAGTCCTCTGGCAGAGAAAGATGAAAATGGAAAATACATTTACCTGGACTTTGTGCCTGTGACGTTCATGCTGCCAGCAGACTACAACCTGTTTGTTGAAGAATTTCGCAAGAGTCCATCCAGCACATGGATCATGAAGCCATGTGGCAAGGCTCAGGGCAAAGGCATCTTCCTTATTAATAAACTCTCCCAGATCAAGAAATGGTCCAGAGACAGCCGCACTTCCACATTTGTGGCAGCTAACAGTGGGAAGGAAGCATATGTGATCTCACTGTATATTGATAATCCGTTGCTGATTGGCGGAAAGAAGTTTGATTTGCGCCTGTATGTTCTAGTTACAACCTACCGGCCTCTTAAATGTTACATGTATAAACTTGGATTTTGCAGATTTTGCACAGTTAAATACACTCCCAGCACCAGTGAACTGGACAACATGTTTGTGCATCTTACAAATGTTGCAATCCAGAAACATGGGgaTGATTATAATCATGTGCATGGTGGGAAATGGACAGTCAGTAATCTGCGTCTGTATCTGGAGAGCACCAGAGGAAAGGAGGTCACAAACCTTCTCTTTGACCAAATCCATTGGATTGTGGTGCAGTCGCTTAAAGCTGTGGCTATATGGGCATTCCCAAGGCCTCCCCTGAGATTCCACTTCATGATCAATATACATATTACTTACAGTCCTGTAATGAACAACGACAAACACTGCTTCGAGTGCTATGGCTACGATATCATCATTGATGACAAGCTGAAGCCGTGGCTTATTGAAGTGAATGCCTCTCCTTCGCTCACCTCCAGCACTGCGAATGACCGCATCCTGAAGTACAACCTGATTAATGATACTCTCAACATTGTTGCTCCCAATGGTGAGATCCCAGACTGCCGATGGAACCGGAGCCCGCCCAAAGAAGCTCTGGGGAACTATCAAGTCCTGTAA

Function

symbol description
ttll1 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be located in cytoplasm and microtubule. Predicted to be active in cilium. Orthologous to human TTLL1 (tubulin tyrosine ligase like 1).

NR:

description
probable tubulin polyglutamylase TTLL1 isoform X1

GO: NA

KEGG:

id description
K16599 TTLL1; tubulin polyglutamylase TTLL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229839.3 True 2548 mRNA 0.43 11 8498224 8507578
XM_007229841.3 False 2478 mRNA 0.43 10 8498224 8507574
XM_007229842.3 False 1559 mRNA 0.47 10 8499970 8507579

Neighbor

gene id symbol gene type direction distance location
LOC103038884 pacsin2,LOC103038884,LOC108279716 coding downstream 1831 8464126 ~ 8496393 (-)
arfgap3 arfgap3,LOC108279714 coding downstream 35670 8447310 ~ 8462554 (-)
terf2 NA coding downstream 53936 8415862 ~ 8444288 (-)
cct2 cct2,tcpb coding downstream 97321 8389780 ~ 8400903 (-)
LOC103036771 LOC103036771,LOC108425308 coding downstream 108949 8381497 ~ 8389275 (-)
LOC103041774 NA coding upstream 34891 8542470 ~ 8553565 (-)
LOC103042080 LOC108425318 coding upstream 79689 8587268 ~ 8590316 (-)
LOC103045460 NA coding upstream 663412 9170991 ~ 9192565 (-)
LOC103042700 LOC108425355,LOC108279935 coding upstream 716135 9223714 ~ 9227248 (-)
nup50 nup50,LOC107699201,LOC107719874,LOC107562145,LOC107601009 coding upstream 744758 9252337 ~ 9266879 (-)
G62858 NA non-coding downstream 63828 8433715 ~ 8434396 (-)
G62832 NA non-coding downstream 164901 8332508 ~ 8333323 (-)
G62821 NA non-coding downstream 218230 8277685 ~ 8279994 (-)
G62748 NA non-coding downstream 546790 7949835 ~ 7951434 (-)
G62732 NA non-coding downstream 687442 7810553 ~ 7810782 (-)
G62907 NA non-coding upstream 139306 8646885 ~ 8647296 (-)
G62950 NA non-coding upstream 512910 9020489 ~ 9020985 (-)
G63034 NA non-coding upstream 898826 9406405 ~ 9409548 (-)
LOC103022044 NA non-coding upstream 907464 9415043 ~ 9418822 (-)
G63041 NA non-coding upstream 974621 9482200 ~ 9482517 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 324408 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 878792 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 1638554 6787342 ~ 6859670 (-)
G62484 NA other downstream 1760276 6671610 ~ 6737948 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 1111082 9618661 ~ 9622788 (-)
G63217 NA other upstream 1807220 10314799 ~ 10411231 (-)
G63516 NA other upstream 3812976 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 3857889 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 4298392 12805971 ~ 13027498 (-)

Expression


Co-expression Network