LOC103042700 (LOC108425355,LOC108279935)


Basic Information

Item Value
gene id LOC103042700
gene name LOC108425355,LOC108279935
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9223714 ~ 9227248 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229847.3
CTTAGCTTGAGAAATCTGGGAAAGCAAACATTGCTCAATATTTGATAGTCTGCTAGTAAATATTGCCTAATCCTTTAGGGAATGTCAATACACTGATCAGAAAAACCACTGACAAACCACATCAACCAGCATAAAGACACACAGAGTACAGTAACTAGTAACAAGCCTTTGTAACGATCTTCTGTGATCAGCTTTAGGCATGAAGATTCTGCTGGGGATCATATGGTGTGTGGTGGTCCAGTCTAAGAGCCTAATGTTCCAGCCTCTGGACTGTGCAGATATTTATAATGATAGATCCTGGGGAAGTGGTGTGTACCTGATCTATCCAGCTGGACCCACGTCTGGTAGATATGTGTACTGTGACATGCAGACTGATGGAGGGAAATGGACGGTGTTCCAGAGAAGAACGGATGGTACACTGAACTTCTACAGAGGATGGGAGCAGTATAAGAATGGGTTTGGTCATGCAGCTGGAGAATACTGGCTGGGACTTGAGACAATCCATCTTCTCATCCTGAAGAAGAACTACGAGCTGAGGGTGGATATGGAGGATTTTGATGGGAAAAAACTTTACGCAAAATACAAGTCCTTCGGCATTTCTCCAATGGCTGTTAATGCAGAACTGGACGGATACAGACTCCATGTGGATGGGTTTGAGGATGGAGGAGCAGGAGATTCCTTATCCTACCACAACGGATCAAAGTTCTCAACCTATGACAAAGACCAGGACATGTATGAAGGGAACTGCGCTGTTTCCTATGTGGGAGCACACTGGTACAACTCCTGCTACTGGTCCAACCCTAATGGACTCTACACATGGGGAGCAGATTCCCAATTCGGATTGAACTGGAGGTCTTGGAAAGCCTTCGTCTCAGTCAAGAGCTTCAGCATGATGATCAGACCGGtcaatctgatctgatctttaAGACTTTAAGGACATTAACTGAAATAATAGAGTCTGTTCTGTTGAACATCAGCCTGGAGTAATCTCTTGTTCATGTGGTTCTATAAGCTATGATGTTTCTTGATGTATTGGTGGCGTCTGACGAATTGGAGATCACAGGAGACCAGTGTTCAACACTGAAACTCCTCCTAATccctaaaataacaatattatggTTTCAGAGGGAGAAATATGCTTATTCTTTCTAATCTTTCTTTGAGATACACtgctttataatattttttttattagtaatacatttataataaactaAAGACATACCAAAAAATGATTACAATCATCTGCTGACATCacataattgtttatttattttgtattttttaattcctTTTTACTAGCCTTAAATTGTCCTGTCACCActtttttggaatgtgctgCCGGTCCTaaagacaaaattaaaaataatgtctttctttgatttt
>XM_015605619.2
GAAATCTGGGAAAGCAAACATTGCTCAATATTTGATAGTCTGCTAGTAAATATTGCCTAATCCTTTAGGGAATGTCAATACACTGATCAGAAAAACCACTGACAAACCACATCAACCAGCATAAAGACACACAGAGTACAGTAACTAGTAACAAGCCTTTGTAACGATCTTCTGTGATCAGCTTTAGGCATGAAGGTGTTCCAGAGAAGAACGGATGGTACACTGAACTTCTACAGAGGATGGGAGCAGTATAAGAATGGGTTTGGTCATGCAGCTGGAGAATACTGGCTGGGACTTGAGACAATCCATCTTCTCATCCTGAAGAAGAACTACGAGCTGAGGGTGGATATGGAGGATTTTGATGGGAAAAAACTTTACGCAAAATACAAGTCCTTCGGCATTTCTCCAATGGCTGTTAATGCAGAACTGGACGGATACAGACTCCATGTGGATGGGTTTGAGGATGGAGGAGCAGGAGATTCCTTATCCTACCACAACGGATCAAAGTTCTCAACCTATGACAAAGACCAGGACATGTATGAAGGGAACTGCGCTGTTTCCTATGTGGGAGCACACTGGTACAACTCCTGCTACTGGTCCAACCCTAATGGACTCTACACATGGGGAGCAGATTCCCAATTCGGATTGAACTGGAGGTCTTGGAAAGCCTTCGTCTCAGTCAAGAGCTTCAGCATGATGATCAGACCGGtcaatctgatctgatctttaAGACTTTAAGGACATTAACTGAAATAATAGAGTCTGTTCTGTTGAACATCAGCCTGGAGTAATCTCTTGTTCATGTGGTTCTATAAGCTATGATGTTTCTTGATGTATTGGTGGCGTCTGACGAATTGGAGATCACAGGAGACCAGTGTTCAACACTGAAACTCCTCCTAATccctaaaataacaatattatggTTTCAGAGGGAGAAATATGCTTATTCTTTCTAATCTTTCTTTGAGATACACtgctttataatattttttttattagtaatacatttataataaactaAAGACATACCAAAAAATGATTACAATCATCTGCTGACATCacataattgtttatttattttgtattttttaattcctTTTTACTAGCCTTAAATTGTCCTGTCACCActtttttggaatgtgctgCCGGTCCTaaagacaaaattaaaaataatgtctttctttgatttt
>XM_022671312.1
AGTCTGAAAAGCAGCTCTCGGATTTATGAGTGTGAACTTTGACCAGTGTCAGTGTTTAACATTTAGGCTAGACTCAGATTAGCTGAATATGTTGTGTACTCCCTTATTTTTGGTAAGCAtgtcttatcttattttataccATTTGCTCACGAAGATTCTGCTGGGGATCATATGGTGTGTGGTGGTCCAGTCTAAGAGCCTAATGTTCCAGCCTCTGGACTGTGCAGATATTTATAATGATAGATCCTGGGGAAGTGGTGTGTACCTGATCTATCCAGCTGGACCCACGTCTGGTAGATATGTGTACTGTGACATGCAGACTGATGGAGGGAAATGGACGGTGTTCCAGAGAAGAACGGATGGTACACTGAACTTCTACAGAGGATGGGAGCAGTATAAGAATGGGTTTGGTCATGCAGCTGGAGAATACTGGCTGGGACTTGAGACAATCCATCTTCTCATCCTGAAGAAGAACTACGAGCTGAGGGTGGATATGGAGGATTTTGATGGGAAAAAACTTTACGCAAAATACAAGTCCTTCGGCATTTCTCCAATGGCTGTTAATGCAGAACTGGACGGATACAGACTCCATGTGGATGGGTTTGAGGATGGAGGAGCAGGAGATTCCTTATCCTACCACAACGGATCAAAGTTCTCAACCTATGACAAAGACCAGGACATGTATGAAGGGAACTGCGCTGTTTCCTATGTGGGAGCACACTGGTACAACTCCTGCTACTGGTCCAACCCTAATGGACTCTACACATGGGGAGCAGATTCCCAATTCGGATTGAACTGGAGGTCTTGGAAAGCCTTCGTCTCAGTCAAGAGCTTCAGCATGATGATCAGACCGGtcaatctgatctgatctttaAGACTTTAAGGACATTAACTGAAATAATAGAGTCTGTTCTGTTGAACATCAGCCTGGAGTAATCTCTTGTTCATGTGGTTCTATAAGCTATGATGTTTCTTGATGTATTGGTGGCGTCTGACGAATTGGAGATCACAGGAGACCAGTGTTCAACACTGAAACTCCTCCTAATccctaaaataacaatattatggTTTCAGAGGGAGAAATATGCTTATTCTTTCTAATCTTTCTTTGAGATACACtgctttataatattttttttattagtaatacatttataataaactaAAGACATACCAAAAAATGATTACAATCATCTGCTGACATCacataattgtttatttattttgtattttttaattcctTTTTACTAGCCTTAAATTGTCCTGTCACCActtttttggaatgtgctgCCGGTCCTaaagacaaaattaaaaataatgtctttctttgatttt

Function

NR:

description
PREDICTED: microfibril-associated glycoprotein 4-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229847.3 True 1386 mRNA 0.40 5 9223714 9227248
XM_015605619.2 False 1190 mRNA 0.39 4 9223714 9227238
XM_022671312.1 False 1335 mRNA 0.40 4 9223714 9227023

Neighbor

gene id symbol gene type direction distance location
LOC103045460 NA coding downstream 31149 9170991 ~ 9192565 (-)
LOC103042080 LOC108425318 coding downstream 633398 8587268 ~ 8590316 (-)
LOC103041774 NA coding downstream 670149 8542470 ~ 8553565 (-)
ttll1 ttll1,LOC102779306 coding downstream 716135 8498224 ~ 8507579 (-)
LOC103038884 pacsin2,LOC103038884,LOC108279716 coding downstream 727321 8464126 ~ 8496393 (-)
nup50 nup50,LOC107699201,LOC107719874,LOC107562145,LOC107601009 coding upstream 25089 9252337 ~ 9266879 (-)
arhgap8 arhgap8 coding upstream 207866 9435114 ~ 9459694 (-)
fbln1 NA coding upstream 623682 9850930 ~ 9864019 (-)
LOC103036113 LOC108279889 coding upstream 638112 9865360 ~ 9887488 (-)
LOC103042295 LOC108425305,LOC105896948,LOC105020256,LOC108279434,LOC105913407 coding upstream 759056 9986304 ~ 10032671 (-)
G62950 NA non-coding downstream 202729 9020489 ~ 9020985 (-)
G62907 NA non-coding downstream 576418 8646885 ~ 8647296 (-)
G62858 NA non-coding downstream 789318 8433715 ~ 8434396 (-)
G62832 NA non-coding downstream 890391 8332508 ~ 8333323 (-)
G62821 NA non-coding downstream 943720 8277685 ~ 8279994 (-)
G63034 NA non-coding upstream 179157 9406405 ~ 9409548 (-)
LOC103022044 NA non-coding upstream 187795 9415043 ~ 9418822 (-)
G63041 NA non-coding upstream 254952 9482200 ~ 9482517 (-)
G63042 NA non-coding upstream 258774 9486022 ~ 9486233 (-)
G63105 NA non-coding upstream 410440 9637688 ~ 9642240 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 1049898 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 1604282 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 2364044 6787342 ~ 6859670 (-)
G62484 NA other downstream 2485766 6671610 ~ 6737948 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 391413 9618661 ~ 9622788 (-)
G63217 NA other upstream 1087551 10314799 ~ 10411231 (-)
G63516 NA other upstream 3093307 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 3138220 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 3578723 12805971 ~ 13027498 (-)

Expression


Co-expression Network