phyh (phyh,LOC107743808)


Basic Information

Item Value
gene id phyh
gene name phyh,LOC107743808
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4116738 ~ 4121756 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232263.3
GTCAGTGTATCTGCCTGTCACGTACTTTGGTACTTTGTCCCAGTTAGGCTAAGCTACCTATATGTAGGCAAACAGAAGCGCTGGGAGGAACCAGAGAGTGCACACAGAAGCTGCTGTCAGCAGAAGAGcttattttatttggtttttgGGCTAAACAAGATGTCTCGACGCGCAGCGGACAGGCTGAAGGTTGTCCTCAATCATCTGGACCGCTCCAACTCTGCTTCTGTTCGCTCATCCTTCACTTCATCCCAGGCAGTGTCATATCATCCTCAAACATTACGGTACACCTTTGACACAGGTTTCCTGAGTCCAGAGCAGAGGATattttatgaagaaaatggcttTTTACTCATCAAAAACCTGGTTTCCGAAGAGGACATTGATCGTTTTAGGGCAGAGTTTGAGCATGTCTGTAAAGGAGACGTGAAGATTCCAGGCATGGTGGTGATGAGAGATGTAGCTATTGCGAAGTCTGAGTTTGTGCGTGATCAGAAGGCTGTATCTAAACTTCAGGATTTCCAGGATGATGCAGAACTATTCCGCTACTGCAGTTTGCCCCAgATTCTGAAGTATGTGGAGTGTTTTACTGGCCCCAACATCATGGCAATGCACACAATGCTCATTAATAAACCCCCAGATGCAGgaaAGAAGACATCTCGTCACCCCATGCACCAGGACCTGCACTACTTTCCCTTTCGCCCAGTCGACCACATTGTCTGTGCCTGGACTGCCATGGAGAAGGTGAACCGACAGAATGGCTGCCTGGTAGTGCTTCCTGGAAGCCACAAGGGCACCCTTCAGGAACATGACTATCCAGAATGGGAGGGTGGTGTAAACAAGATGTACCATGGTGTTCGCAACTATGATCCAAACCACCCGAGAATGCATGTGGAGATGGAAAAAGGAGACACCTTATTCTTTCACCCTTTGCTCATCCACGGCTCGGGAATGAACCAAACACAGGGATTCCGGAAGGCCATCTCCTGTCACTATGCCAGTGCTGACTGTTATTACATTGATGTGACTGGGACAAGCCAGGAGAACATTAGTAAGGAGGTGAATGAAATTGCTACCAGAAGATATGGAACAGATATATCCGTTTCCTTTGCGGATACCTGGGCTTTGAGAGGACGCCTGGTCCATGGAGAGAGGACATCACTTTGATCCTCCTGTCTTGTTTTGTCAGAAACACACCCACAGGAGAAAGTGGTGGTAGTACAAAGGAATTATTAGAATTGGTTTAATCATGTAGCAGCTGGCCATCGACAAACAGTTTTATACAGTAATGTAACACTAATTCTGGGTTATCACTCAAAATAGCTTCAGAGTTTACTACATATGTAGTACAATTTTGTCTGCATGCGTTACATTTAACATAAGGACAGATTAGAGCAGTTTGATCGAGACATAAGGACAAATGTGTGAGAAATGGAAGGTGAACTGAAAGTTTATCAGCATGTGTTATAAATGAATTATTAGTAATAACCTAGTAATTTTACAATCTTCCTCTGAACGGAATATCAATTTTGTCTCTAATCATTGGCATTAAAAATGAGTTATAATTTTTGAAGGAACTGTAGAGAAAATTGTTTCCTTTTAAGTATATGGAAGAGTATTTTCTTTGAAAAAATGTGGAATTAGAATGGAATGCATTAGCATTTAATTAAAGGCTGCTAATGTTCACTTAGTTTTGCCTTCACACTGTAAGTGCTGCTAATtgtaaacatgttaaaatgtttaataaaattgtaatcttatatataatataa

Function

symbol description
phyh Predicted to enable phytanoyl-CoA dioxygenase activity. Predicted to be involved in fatty acid alpha-oxidation. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in Refsum disease; Zellweger syndrome; orofacial cleft; and peroxisomal disease. Orthologous to human PHYH (phytanoyl-CoA 2-hydroxylase).

NR:

description
PREDICTED: phytanoyl-CoA dioxygenase, peroxisomal

GO: NA

KEGG:

id description
K00477 PHYH; phytanoyl-CoA hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232263.3 True 1772 mRNA 0.42 9 4116738 4121756

Neighbor

gene id symbol gene type direction distance location
LOC103027117 LOC103027117,LOC108438787 coding downstream 2370 4100965 ~ 4114368 (-)
wnt7b wnt7b,wnt7ba,LOC103028473,LOC107695867,LOC107725526,LOC107732964 coding downstream 126256 3968846 ~ 3990482 (-)
LOC103029416 LOC108438794 coding downstream 186135 3919017 ~ 3930603 (-)
LOC103029733 LOC108438795 coding downstream 201109 3900201 ~ 3915629 (-)
LOC103036181 LOC108438810,LOC108279896 coding downstream 227098 3868738 ~ 3889640 (-)
LOC111192866 NA coding upstream 3034 4124790 ~ 4127308 (-)
LOC103040249 tnnt2e,LOC108425385,LOC108279691,LOC107658902 coding upstream 196684 4318440 ~ 4334012 (-)
LOC107197701 zgc:101560,LOC108425328,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC107658770,LOC107584059 coding upstream 326120 4447876 ~ 4461525 (-)
LOC103023194 dock4b,LOC108425388,LOC108279862,LOC107656358 coding upstream 879194 5000950 ~ 5199612 (-)
LOC103042505 LOC103042505,LOC108425390,LOC108280006 coding upstream 1192801 5314557 ~ 5336399 (-)
G61837 NA non-coding downstream 17357 4083724 ~ 4099381 (-)
G61833 ppara non-coding downstream 40766 4073769 ~ 4075972 (-)
G61818 NA non-coding downstream 103398 4010788 ~ 4013340 (-)
G61785 NA non-coding downstream 106795 4009437 ~ 4009943 (-)
G61760 NA non-coding downstream 178948 3936684 ~ 3937790 (-)
G61851 NA non-coding upstream 8583 4130339 ~ 4130964 (-)
G61856 NA non-coding upstream 27795 4149551 ~ 4149817 (-)
LOC111192867 NA non-coding upstream 190293 4312049 ~ 4313739 (-)
G61907 NA non-coding upstream 401403 4523159 ~ 4523371 (-)
G61930 NA non-coding upstream 474810 4596566 ~ 4596986 (-)
cdpf1 cdpf1,LOC107695897 other downstream 270269 3840601 ~ 3846469 (-)
G61676 NA other downstream 458470 3650845 ~ 3658268 (-)
mdm1 NA other downstream 568036 3529520 ~ 3548702 (-)
G61587 NA other downstream 801499 3314153 ~ 3315239 (-)
LOC103031776 NA other downstream 1582385 2464834 ~ 2534353 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 213362 4335118 ~ 4426156 (-)
G61942 NA other upstream 500457 4622213 ~ 4622577 (-)
G62377 NA other upstream 2252713 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 2511254 6633010 ~ 6695389 (-)
G62484 NA other upstream 2549854 6671610 ~ 6737948 (-)

Expression


Co-expression Network