LOC103027117 (LOC103027117,LOC108438787)


Basic Information

Item Value
gene id LOC103027117
gene name LOC103027117,LOC108438787
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4100965 ~ 4114368 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232264.3
GGCCAGCTGCAACCTTCAGTCGAGCCGTTCAGTGTTTTGAAGTAGAGGCTTTTTTCACGAACAACAACCTCTCAGCTAATTCTAAACTTGGTGGATTATAGACAGTGACATTTCATGGCAGGACTGTGTCTTGATAATTGCTGATTTTCCTGAACATCCAAATAAATTTTCTCTCAGCCTAGGGTGACAAATTATGTATTCTTAAGCAAAACAGCACATGCTTACATTGATGTGTTTTGATAATTTTGAAATCTGCTGTTGTTTATTCTTCCACAGATCTGGCCTGagaaaaaaatctacatatgTTTGCACTTTTCAAGTGGCAACCATGATAACTAACAGGAAATCACAAGGCCCTGGGCTTGGTGCCTGGACCACTTTGGCTGAGCTACCTGCAGAATACTTTCTCTCTAACTCTTTCTAACACACCAACTGAACCATGGCCTGGGTGCACATTGTTCTGCTGACCCTGCTGCCCACCATCCTCATCCTCACTGTGTTGTCTGAGGTAGAGGGTGCAGCAGTAAAGGATGAAAAAGACAGTGAGGCTAGTGGACCCTCTAAGCGAGTTTTCATGCCAGCATCAGATGCTTCCAACTTCTTCAAACGCCGTGGCCGCAGATCCCCAAAATCCCATGCTGAGTATTTTGCTGAGCAGAGAGTGCAGTTGGCGCAGGCAGAGCGCAGGAGGGAGTACTATGAGGAACAGAGCAACGAGTATGAGAACCATGTGGAGGAATCGCGAGACGAGCAGCACGAGAGGACCCGGGAGACGATGGATCAGTGGCGGCAGTATCACTATGATGGACAGTACCCACGATACCCCCACCACCGCCCATATTACTGAGCATGCTCCATCAGTCCACGACATGTGCATCACTctgaaatgtaacatttttactGGGTCTGATGCTCACTTCCCCCAAAATATCTTATATTTCtagcttttatatatatatatgtagatgtaTATCTTACAAGTGCAATACCATCTCTTTAGATTATATAGattaaacctaaacctagacTAAAAA
>XM_022671248.1
ttcccttaCTCCTTCactcacacatttacacactcatGCACCCTCCTCCAGGTGCCTGGACCACTTTGGCTGAGCTACCTGCAGAATACTTTCTCTCTAACTCTTTCTAACACACCAACTGAACCATGGCCTGGGTGCACATTGTTCTGCTGACCCTGCTGCCCACCATCCTCATCCTCACTGTGTTGTCTGAGGTAGAGGGTGCAGCAGTAAAGGATGAAAAAGACAGTGAGGCTAGTGGACCCTCTAAGCGAGTTTTCATGCCAGCATCAGATGCTTCCAACTTCTTCAAACGCCGTGGCCGCAGATCCCCAAAATCCCATGCTGAGTATTTTGCTGAGCAGAGAGTGCAGTTGGCGCAGGCAGAGCGCAGGAGGGAGTACTATGAGGAACAGAGCAACGAGTATGAGAACCATGTGGAGGAATCGCGAGACGAGCAGCACGAGAGGACCCGGGAGACGATGGATCAGTGGCGGCAGTATCACTATGATGGACAGTACCCACGATACCCCCACCACCGCCCATATTACTGAGCATGCTCCATCAGTCCACGACATGTGCATCACTctgaaatgtaacatttttactGGGTCTGATGCTCACTTCCCCCAAAATATCTTATATTTCtagcttttatatatatatatgtagatgtaTATCTTACAAGTGCAATACCATCTCTTTAGATTATATAGattaaacctaaacctagacTAAAAA

Function

NR:

description
unique cartilage matrix-associated protein

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232264.3 True 1034 mRNA 0.44 6 4100965 4114368
XM_022671248.1 False 720 mRNA 0.48 5 4100965 4110923

Neighbor

gene id symbol gene type direction distance location
wnt7b wnt7b,wnt7ba,LOC103028473,LOC107695867,LOC107725526,LOC107732964 coding downstream 110483 3968846 ~ 3990482 (-)
LOC103029416 LOC108438794 coding downstream 170362 3919017 ~ 3930603 (-)
LOC103029733 LOC108438795 coding downstream 185336 3900201 ~ 3915629 (-)
LOC103036181 LOC108438810,LOC108279896 coding downstream 211325 3868738 ~ 3889640 (-)
LOC103036484 NA coding downstream 235229 3855542 ~ 3865736 (-)
phyh phyh,LOC107743808 coding upstream 2370 4116738 ~ 4121756 (-)
LOC111192866 NA coding upstream 10422 4124790 ~ 4127308 (-)
LOC103040249 tnnt2e,LOC108425385,LOC108279691,LOC107658902 coding upstream 204072 4318440 ~ 4334012 (-)
LOC107197701 zgc:101560,LOC108425328,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC107658770,LOC107584059 coding upstream 333508 4447876 ~ 4461525 (-)
LOC103023194 dock4b,LOC108425388,LOC108279862,LOC107656358 coding upstream 886582 5000950 ~ 5199612 (-)
G61837 NA non-coding downstream 1584 4083724 ~ 4099381 (-)
G61833 ppara non-coding downstream 24993 4073769 ~ 4075972 (-)
G61818 NA non-coding downstream 87625 4010788 ~ 4013340 (-)
G61785 NA non-coding downstream 91022 4009437 ~ 4009943 (-)
G61760 NA non-coding downstream 163175 3936684 ~ 3937790 (-)
G61851 NA non-coding upstream 15971 4130339 ~ 4130964 (-)
G61856 NA non-coding upstream 35183 4149551 ~ 4149817 (-)
LOC111192867 NA non-coding upstream 197681 4312049 ~ 4313739 (-)
G61907 NA non-coding upstream 408791 4523159 ~ 4523371 (-)
G61930 NA non-coding upstream 482198 4596566 ~ 4596986 (-)
cdpf1 cdpf1,LOC107695897 other downstream 254496 3840601 ~ 3846469 (-)
G61676 NA other downstream 442697 3650845 ~ 3658268 (-)
mdm1 NA other downstream 552263 3529520 ~ 3548702 (-)
G61587 NA other downstream 785726 3314153 ~ 3315239 (-)
LOC103031776 NA other downstream 1566612 2464834 ~ 2534353 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 220750 4335118 ~ 4426156 (-)
G61942 NA other upstream 507845 4622213 ~ 4622577 (-)
G62377 NA other upstream 2260101 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 2518642 6633010 ~ 6695389 (-)
G62484 NA other upstream 2557242 6671610 ~ 6737948 (-)

Expression


Co-expression Network