atxn10 (atxn10)


Basic Information

Item Value
gene id atxn10
gene name atxn10
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3956662 ~ 3968956 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232269.3
CTGGGGTTGTTGTAGCGGCTCGCAGTCCCTGTGGCTGTGTGACAGAAAGCATGTGGAGCCTGAAGTCTGTGAACCTGGAGGATTTACTTGCAGACAGGTTAAATCTGCAGCTCCTCGCTGTCCTGCAGGCCGCGACCAACAATTTCCGAGATGAAGAGCTCAGATTCAATGTCGAGGTGGATGTCCTTGAGAGACTGTCTGCAGTGCTGTCCAGGCTCTCAGAGGAGATTCAGGTTTTAAGTGACGTGAATGATGAACAGCAGTCCGCTTTGCTGTGTCTTCAGCTTACGGCCGAATGTTTCAGAGCTCAACGAAATGCCTGTGTGCAGTGTTCCCGCAACCAGTGTTTTTTAAGaGATCAAGGCTGTATCCAGGTATCATTAGAGATTTTGAGAAAGCTCCTCAAGCTTGCTTCTGGAGTCTCAGATTACCTTTTTGATGCACTTCGATGTGGGATTCAATTTCTCGGTAACATTGCAGTTGGGAACCCTCTCTGCAAAACTGACATTTGGGACCATGGTTTTCCACACATATTTTCGGATCTGCTGGAGCTTCCTGATGAGAAGACTATAGCGTATACGTGCATGGTGCTTCACACCTGTCTGGATGAGGACAAAATAGAGCAGCTGGGGACAGAACCGGAGCAGCTGAAGGTGGCGCTGAAGGTCACTGAGTTGTGCCGGACTCTGCCAGAAGTAGACTGGACGGTGCTGATTGTCACCCAACATTTCTTCAGATCATCTAAACTCATTGAAAGGATGTATACAGAGATGACTGATCAAGAAAGgcttaCTTTACTGGATCTGATCTCAGCCCAACTTGGGGAAGGTAAAGAGGACTGTCTGATTCCTCTGAAAACAGCCCAGTTTCTAGCCACCTGCTTCCAGCACAGCTGCAGAGATGTTCTTTCTCTTAGCTCTGTCTCATCAGCAGATGATCAGAAAGCCTTGGCAGTGATCACACTTCTGGATATTCTCTGTGAGATGACCTCTGACCAGAAAACATTTATGGCGCTGCAGGATCACCCAGACCTTCTCCAAACAGCCATTGATCTCCTGAAGGAAGTCAACTTGCTGGGGAAAACCAGTAGGAACGTCTTCAGTGCGGCTCAGGAGTTCAACTTTACAAAGTCAGGGGGTACTGGTGCCCATCCTGCGCTCAGCTTCAAAGCCCACCTGATCCGACTGATTGGAAACCTATGCCACAGCCACACAATCAACCAGGATCAGGTCAGAGAACTGGACGGTTTAGCCCTTATCCTGGACAACTGCAGCATTGACAGCAACAATCCATTCATAAGCCAATGGGCAGTCTTTGCCATCCGCAACATTCTTGAACATAACCTGGAGAACCAGAAGCTGGTGCAGGGCCTGAGGAGGCAGGGGGTGGCTGACGACACGGTGCTGAGGGAAATGGGCTTCCGTGTGGAGGAGAGGGATGGCAGCTTGCTCCTCAGACCCctgaagaaggaggaggaggagctgggaGAGCGCTAAACCAAGAGCACCAGAGTTCTTCCCACCCCATCCCATTCCCCTACGCTCTAAATTACACTCTGGAGACAGCTTAAGACACCCACTGAGTCCGTTGTGCACACAAAAAACGCAGAGGGCATTTTAATATCCAATCAGTATTGTGAACACAAGGAGAAAAAGGTTGGGGGGGCTGTGCTTTGTGCCATCAACAGAAGAGGAGCGCTGAGGGCTTTTCTCCCGGGACTCATGCTGATGTCTGTGATGCATTTAGTGGTCTTTGATTCCAGCTCCCCCTGAATAGGATTCAAATCCTCTGAAACAAGGAGACCCATGTCTTCCTGGCTTTTCAGCTACCAAATAGATTCTGGTGACCAGTGGGGAATAGGGGTTAATCCCTAATCCAGTGAGTTTTATGGAGAGACCTGGGGCCTCCTGATCCGTTCACACAAGAGTTGACTCAATAGCCGTGGGACTTGGTTCCACTTGTTGGGTTtgttttgtgggttttttttttcttttcttttttttggctctGTTTTGTGCTTCTGAATATCACAGGTTTATCTGCAGCCCTACAAAATTCTTGTGCTGCTTTTTTCTATTACAGATAAATTAACAAGTAGCAAACTTA

Function

symbol description
atxn10 Predicted to be involved in neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 10. Orthologous to human ATXN10 (ataxin 10).

NR:

description
ataxin-10

GO: NA

KEGG:

id description
K19323 ATXN10; ataxin-10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232269.3 True 2106 mRNA 0.49 11 3956662 3968956

Neighbor

gene id symbol gene type direction distance location
LOC103029111 NA coding upstream 6928 3937491 ~ 3949734 (+)
LOC103031106 LOC108438797 coding upstream 102935 3847043 ~ 3853727 (+)
cfap54 NA coding upstream 261738 3656162 ~ 3694924 (+)
mcat mcat,LOC107553884,LOC107732994 coding upstream 305011 3645317 ~ 3651651 (+)
rap1b rap1b,LOC106576640,LOC107695907 coding upstream 314239 3562745 ~ 3642423 (+)
LOC103027723 ppara coding downstream 79286 4048242 ~ 4074563 (+)
mcm10 NA coding downstream 114727 4083683 ~ 4099389 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding downstream 706403 4675359 ~ 4701435 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding downstream 1282177 5251133 ~ 5261551 (+)
LOC107197570 LOC108442310 coding downstream 1452812 5421768 ~ 5423304 (+)
LOC111192865 NA non-coding upstream 242414 3713557 ~ 3714248 (+)
LOC111192864 NA non-coding upstream 243239 3712242 ~ 3713423 (+)
G61657 rint1 non-coding upstream 258881 3695234 ~ 3697781 (+)
G61607 NA non-coding upstream 558890 3394516 ~ 3397772 (+)
LOC103028258 NA non-coding downstream 42428 4011384 ~ 4044308 (+)
G61804 NA non-coding downstream 87483 4056439 ~ 4056959 (+)
G61815 NA non-coding downstream 153726 4122682 ~ 4122963 (+)
G61790 NA non-coding downstream 161361 4130317 ~ 4131090 (+)
G61786 NA non-coding downstream 162807 4131763 ~ 4136771 (+)
G61575 NA other upstream 652664 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 2021163 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 2147732 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 2475244 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 2913346 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 1771599 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 1813135 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 2013280 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 2882274 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 4432884 8401840 ~ 8415039 (+)

Expression


Co-expression Network