rint1 (rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313)


Basic Information

Item Value
gene id rint1
gene name rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3695187 ~ 3703230 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232279.3
GTTTGCTGCTGATGACGTGGGCAGGCTGAGGGAGAAACATGGCGGCGGCCGCTGTGGAGCAGGATAATAACAGTATGAATGGTGAAGATAGCGGTGTGAATAAAAGCGAGCCCGGGTCCAGCTGTGCTGAGGGGGTCGGGGGCTGTGTGGAGCAGCATGTGGCGGAGCTGCTGCAGAGGGAGATTGGAGGAGACCTGAAGTCTCTGAGGAAAGTTGGGGGGCTTCTGGAGAAACTGACAGCAGAGAACATGTTACTGGAGGAGCAGGTGTTGACTGTATCCAGCTCAGTGCCTCTGCGTGTATCTGCTGCTCTGTCTGCAGCAGAGGAGGCCCGGACGAAGCTGGAGGTCCTGCTCCAGAAGGAGAGGCTCCTGTCCAACACGCTGCAGCAGCATCTGCAGGGAGCTCAGAGCTGGGCCGACAGCCTAGGACAAACACTTGGACAGCTGGACACGCTGGAAAGGCACATGAAGTACCTTCAGTGCTTGGCTCGCATTGAGGAGCTTAGTGACAGTATTCAGCAGTTCCTGATGACTAACAGTGTTTGGGAGGCAATTGGAGCTGTGGGCAATATGGCCACTCTAGACATGGGCCTTCAAGAGTCGGGCTGCTCACATCTACAAGCATTCCTTCGAGAAACATTGCACTTCTGGCACAAGATCCTGAAAGACAAGCTTGCAAGTGACTTTGAGGAGGTGCTGACACAGCTACACTGGCCGATAGTCTCTCCCCCGAcccagtctctctctcctccagctAATGCACAGGAGCTCAACAGCCAGCTGGAGCTCCTGGTGTCTCAGCTCCTCTCCCTGCAGATGTCTGACGATCTTATATCTGAGAAAAAGGAATTGCCCACTCGTCCAGGCTTACCACAGACCCCACCACTCTCGCTGCCTATTCAGATCATGCTACTGCCCCTCAGCAAGAGGTTTAGGTATCATTTCACTGGGAACCGCCAGACCAACTCACTAAACAAGCCAGAGTGGTATCTGACCCAAGTTCTTGTGTGGATGGGCCACAATTCCCCCTTCATGGAGGAGAAGATTCAGCCCATTCTCGATCGTGCTGGAGCCAATGTCAACGCAAAGGTGGAGCTGTGCAGGGGTCTCCTTACTCTGGCTCAGGAGAAACTGACCCACGATGCCCCTCGGCTGCTGTATGACGACACCCTGTTTTGCCACCTGGTGGACGAGGTGCTGCAGTTTGAGAAGGAGCTGCGAAGCACACACGCTTACCCCAGCACTTACCCTGGCGCCCTGCCCATCCTGCTGGAGGAAACTGTCTTCCAAAAGTGGCTCAGTgtggagagaaaaaTGGCAGTGGAGAAGGTGGACGCCATGCTGTCTACAGAAGGGGCCTGGAGCTCTCAGTACAAAGACATCACAGATATAGATGAACTGAAAGCACCAGACTGTGCAGAGACTTTTATGACTCTACTGCTGGTCATTACAGATCGGTATAGATCTTTACCGTGTCCTCAAGCTCAGCTCAGCTTTCTGGCTCTGCAGAGGGAGCTGGTAGATGATTTCCGCATCCGTCTCACCCAGGTGATGAAGGAGGAGTCTCGTCAGCCGCTGGGAGCCCGCTATTGCGCCATCCTGAACGCTGCCAACTACATATCAACAGTTCTCAGTGACTGGGGCGACAATGTGTTCTTCCTGCAGCTGCAGCAAGCAGCAGTTTCTGTGGGCGAAGAAGTTCTGGGGCCTCTTGGGGTCACAGAGAGTGGACGGCTGGCATCTCTGGAGGGCTCTTTGTTTGAAGGACTGCTGGCACTTCTTGAGAGGCTGAGAGGGGACATGCTGGGCCGGCTGCTGGAAGCAGTAATGAGAGACGTAAAGGAAAAGGCCTACCCTTATAGCAGGGACAAGTGGATCTCCTTGCCGTTGCAGTGTGACCAGGCCACCATGTCATTGTCCAGCTCAGCGTGTCCCATGCTGCTGTGCCTGAGGGATCATCTACTCCAGCTGCAGCAGCTGCTCTGCCTTCCCTTGTTCCAGATGTTCTGGCAGGGTCTGGCTGAAAGACTTGACCTCTTCCTGTACCAAGATGTGATACTGTATAACCATTTTAATGAGGGTGGTGCTGCGCAGCTCCAGTTTGACATGACCAGAAACCTCTTCCCATTGTTCGGACACTACTGCAAGAGACCAGAGAACTTCTTTAAACATGTGAAGGAAGCCTGCATCATCCTGAATCTGAAGGTTGGACCAGCTCTTTTGCTGTGTGACGTGTTGAAGCAGGCGGAAGAGGGAGTAGAAGAGGAAGAGGCATCCGTCAGGCCACAGCAGCCCACTCCCGAATCAGCACTGAACGAGCTAGGTGTGTACAAGCTGTCCGCCAGTGATGCGCAGATCCTCCTAAACCTTCGCTCTGCCTGGCTCAACCACTGAGAAGTGTTGAGTGTTCCAGCCTactaaagcagcattaatacccacacacactgaaacatcCAGCAAAGTGTGACAAATGACACTTCAACACTTCCATGTCACTCCTATTTAGGACGATGCATTAAAGTTGGACAACATTCAGTGTTTACATGAGCTACACAATACAGCAGAGTACTGTATTTGTAATAGTGTGGATGACGTGTGCAAAAACAGATTGTGGACCATATTCTACCTTAAATTTTAATCATCATAGTCCGGATGTGCTAAGATTGCTGTTTTAAGCGGTCCAAATCAGCCTTCTGAATAATTATGCAATGTCaagttttgtttgtgtttgaagagaagtgaaataaattcACAATGATTGTGAAAGTCTTTGGTTAATAACAA

Function

symbol description
rint1 Predicted to be involved in regulation of ER to Golgi vesicle-mediated transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within Golgi vesicle transport. Predicted to be located in endoplasmic reticulum. Predicted to be part of Dsl1/NZR complex. Human ortholog(s) of this gene implicated in infantile liver failure syndrome. Orthologous to human RINT1 (RAD50 interactor 1).

NR:

description
PREDICTED: RAD50-interacting protein 1

GO: NA

KEGG:

id description
K20474 RINT1, TIP20; RAD50-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232279.3 True 2786 mRNA 0.52 13 3695187 3703230

Neighbor

gene id symbol gene type direction distance location
LOC103044476 NA coding downstream 223634 3467202 ~ 3471553 (-)
grip1 grip1 coding downstream 669320 2673173 ~ 3025867 (-)
tmbim4 tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279 coding downstream 1026689 2661803 ~ 2668498 (-)
lemd3 lemd3,LOC106576661 coding downstream 1082373 2600412 ~ 2612814 (-)
msrb3 msrb3,LOC107725596,LOC107757268,LOC107587134 coding downstream 1097520 2574909 ~ 2597667 (-)
LOC103030485 NA coding upstream 131102 3834332 ~ 3838502 (-)
LOC103036484 NA coding upstream 152312 3855542 ~ 3865736 (-)
LOC103036181 LOC108438810,LOC108279896 coding upstream 165508 3868738 ~ 3889640 (-)
LOC103029733 LOC108438795 coding upstream 196971 3900201 ~ 3915629 (-)
LOC103029416 LOC108438794 coding upstream 215787 3919017 ~ 3930603 (-)
G61670 rap1b,LOC106576640,LOC107695907 non-coding downstream 52670 3562771 ~ 3642517 (-)
G61630 NA non-coding downstream 179372 3512201 ~ 3515815 (-)
G61611 NA non-coding downstream 296417 3398558 ~ 3398770 (-)
G61610 NA non-coding downstream 297415 3396720 ~ 3397772 (-)
G61609 NA non-coding downstream 299330 3394778 ~ 3395857 (-)
G61746 NA non-coding upstream 84872 3788102 ~ 3854961 (-)
G61754 NA non-coding upstream 143798 3847028 ~ 3851116 (-)
G61760 NA non-coding upstream 233454 3936684 ~ 3937790 (-)
G61785 NA non-coding upstream 306207 4009437 ~ 4009943 (-)
G61818 NA non-coding upstream 307558 4010788 ~ 4013340 (-)
G61676 NA other downstream 36919 3650845 ~ 3658268 (-)
mdm1 NA other downstream 146485 3529520 ~ 3548702 (-)
G61587 NA other downstream 379948 3314153 ~ 3315239 (-)
LOC103031776 NA other downstream 1160834 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 1237061 2454547 ~ 2458126 (-)
cdpf1 cdpf1,LOC107695897 other upstream 137371 3840601 ~ 3846469 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 631888 4335118 ~ 4426156 (-)
G61942 NA other upstream 918983 4622213 ~ 4622577 (-)
G62377 NA other upstream 2671239 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 2929780 6633010 ~ 6695389 (-)

Expression


Co-expression Network