rap1b (rap1b,LOC106576640,LOC107695907)


Basic Information

Item Value
gene id rap1b
gene name rap1b,LOC106576640,LOC107695907
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3562745 ~ 3642423 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232291.3
tacagagagagagagagagagagagagggagctagcaagctgtagagagagatagagcgatagagagagggagaaagggagagaaagggaaagagagaggcgTACATCGGGTTGGAGCTCCGGAGCGGATCTgtgATATTGGACACACTGCATAATGCGTGAATACAAGTTAGTAGTCCTCGGCTCTGGAGGTGTCGGCAAGTCTGCACTGACTGTTCAGTTTGTTCAAGGGATCTTTGTGGAGAAGTATGACCCTACAATAGAAGACTCGTACAGGAAGCAAGTGGAAGTGGATGGCCAGCAATGCATGCTGGAAATTCTGGACACTGCAGGGACGGAACAATTCACAGCCATGAGGGACCTGTACATGAAGAACGGCCAGGGCTTCGCACTAGTATACTCCATAACGGCACAGTCCACATTCAACGACCTGCAGGACTTGAGAGAACAGATCCTGCGAGTTAAAGACACTGACGACGTGCCAATGATCCTGGTGGGGAATAAGTGTGATCTGGAGGATGAAAGAGTGGTGGGAAAGGAGCAGGGACAGAACCTTGCCCGTCAGTGGAACAGCTGCGCCTTCCTGGAGTCCTCCGCAAAGTCCAAGATTAATGTAAATGAGATCTTCTATGACCTGGTCCGGCAAATCAACAGGAAAACTCCAGTACCTGGGAAGACACGCAAAAAGTCCAACTGCCAGCTGCTCTAATACACAGCTGTTCTGTCGCTCTGAGCCAGgtCTGATTTGCTGCTGTGTCTCTCAGCAGTGCCAGCATTCCGACGTTACTAAAACCTAACATCGAATGGACTTTCCTGTGTGGTGATGCCCCTTTAACAAAACCAACCAACCGACCaagcaaaccaaccaaccaaccaaccaaccaaccaacagaTTCAAAGCTACAGTATCATGTTAGTTTTTTTGCACATAGATAACCATGATCACTTTCCAGTGTCGCAAGAAAGAGATTtttacttataaatatataaatatatattctaacTGTATGCAACTGAAATAGAAAAGTAATTACAtggataaacaaataaagagctaaaagaattttaaaaacacagcgcCTACACACAGTGTTATTGCTAACGGAGACAGCCACCGTTGCAAATGTATGGAGCGGGTGTTGAACCTGACTGTGCACGTTGCCATGGCAATTACAATGATGCGATATTTATAAGCACCACTATTTTAGCCAGAGATGAGAGGAAGTCCAAAGAGCGCCTATATAGTCCATTTCATACAGCTAACTTCGCTCCTTGGTTTCTGtgcatttctcttttgttttttgtaactttttcttttcttttttgcttttattttcttcttgattttctttctctctttttttaaagttactaGAATTTGTTTCTGCTCTGCTGAGATGGTATATCGCAAGAACTATTGACATGAGTTTTATCTCTAGGAAAACCTGTGGATTCAGTGATGTAcgtgtaaaaagtaaaacaaaaaatatataatgttttctGTCACTATCATGTTGTTCTTAGCCTCAAATGTTGCCTTCAAATATGTgtttagatctttttttttccttttcttttcaggAGAATCGaaacaaaatgtaacaaaaaattaccaaaaaaaaacaaagcaaactcACAGCCCATCTCAtgccatttttataatttttttgtctcatttacGGATATGTTTGTACACTGGGCGGGGTTTCAAAAAGGGGCCACTTTTGAAAGGGACTTGGCGATTTTAATGCCTCAGCAGTGAGAGTCTAGGATGGTCGTGATGTCATAATGTAGCCCTCTATGATCTCACATCTCGGCAGAGCTGACAGTTAAAAACAGTCCAGTCCCTCATTACAGACTTTTCCCCTTGTCTACTACAGgaggtatacagtatatattttaaagaactGGGGgggttttaatataaaataaaatggaacAAATGTCATCAGTCCAGTTACTGTAGATTTTCACTGTGTGTGACTCCGCCCCACCCAGCCCTTCCCCTTCCCTTTTGCCTGCGAATACATCTGGTAAACCGAGGATATGAAAACCAGATATTGGATGGTTTTCCAGTAAAGAAAATATCTTGCCTGTTAGTGACTGTTTCACCTTTGTAATACTTGGTTTGACCTGTTTTCTGTCTGCGTTCCTGTGGGGTTAACTGTAGTGAATGTCGGGGTGGGGACCTTGCGCTAACGAGCAGGGAGAAAAGGGAACaatgaaagaagaagaaataaatcagaaaaaaaaacaatgaccatGTTGTACCAAGTGCAATCCTACGAGGCATTCATAAAGTATTCATAAGCGCTGGGTGAACTGGAACACAGTGACTCGCAGTCTCTAACCACCGTCGGCGTTTCCCCCCAGCGCCAGCATCCGCACTCTGCATTTTGAGACTGAATATAATGTACAGTTAATGTGCATAATGAACGCTTTATGCATGCGTTCTGTGAGGAACACAACAGCGATGGACGCAGGTTAACCGATGTCTGATCCTCGTCTGATCCTGTAAGCAAATGCCttgttacagttttgttcataagagaaggaaaaaaaaaa

Function

symbol description
rap1b Enables MAP kinase kinase activity. Acts upstream of with a positive effect on hematopoietic stem cell differentiation. Acts upstream of or within chordate embryonic development; convergent extension; and heart development. Located in cell-cell junction. Is expressed in several structures, including brain; cardiovascular system; floor plate; hindbrain neural plate; and mesoderm. Orthologous to human RAP1B (RAP1B, member of RAS oncogene family).

NR:

description
Ras-related protein Rap-1b precursor

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0060026 convergent extension biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07836 RAP1B; Ras-related protein Rap-1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232291.3 True 2565 mRNA 0.42 8 3562745 3642423

Neighbor

gene id symbol gene type direction distance location
dyrk2 dyrk2,LOC107694272,LOC107757277,LOC107655591 coding upstream 188994 3342719 ~ 3373751 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 270152 3267964 ~ 3292593 (+)
LOC103029880 NA coding upstream 905251 2653605 ~ 2657494 (+)
wif1 wif1,LOC107757271,LOC107594874,LOC107725640 coding upstream 920641 2614208 ~ 2642104 (+)
lmo3 lmo3,LOC107757261,LOC107550907 coding upstream 1238485 2274367 ~ 2324260 (+)
mcat mcat,LOC107553884,LOC107732994 coding downstream 2894 3645317 ~ 3651651 (+)
cfap54 NA coding downstream 13739 3656162 ~ 3694924 (+)
LOC103031106 LOC108438797 coding downstream 204620 3847043 ~ 3853727 (+)
LOC103029111 NA coding downstream 295068 3937491 ~ 3949734 (+)
atxn10 atxn10 coding downstream 314239 3956662 ~ 3968956 (+)
G61607 NA non-coding upstream 164973 3394516 ~ 3397772 (+)
G61608 NA non-coding upstream 166710 3394779 ~ 3396035 (+)
G61560 NA non-coding upstream 295858 3266308 ~ 3266887 (+)
G61558 NA non-coding upstream 317616 3244857 ~ 3245129 (+)
G61401 NA non-coding upstream 611651 2950681 ~ 2951094 (+)
G61657 rint1 non-coding downstream 52811 3695234 ~ 3697781 (+)
LOC111192864 NA non-coding downstream 69819 3712242 ~ 3713423 (+)
LOC111192865 NA non-coding downstream 71134 3713557 ~ 3714248 (+)
LOC103028258 NA non-coding downstream 368961 4011384 ~ 4044308 (+)
G61804 NA non-coding downstream 414016 4056439 ~ 4056959 (+)
G61575 NA other upstream 258747 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 1627246 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 1753815 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 2081327 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 2519429 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 2098132 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 2139668 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 2339813 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 3208807 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 4759417 8401840 ~ 8415039 (+)

Expression


Co-expression Network