CI01000010_03116123_03125761 (EDEM3)


Basic Information

Item Value
gene id CI01000010_03116123_03125761
gene name EDEM3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3116123 ~ 3126609 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_03116123_03125761.mRNA
ATGTTGCCTGCTTTTTTGCTGCTGTTTTTTATGGGAACCTCCATCCGGTTGTCTGAGACCATGAGCAGAGATGAGAAGAGCAAACTGAGGAACCAAGTGCTGGAAATGTTTGACCATGCTTATCAGAACTACATGGACCATGCCTACCCCGCAGACGAGCTGATGCCTTTGACTTGCCGTGGGCGAGTGCGTGGATTAGAGCCCAGTCGAGGGGATATAGATGATGCCCTGGGGAAGTTCTCCCTCACCCTCATCGACACTCTTGACACTCTTGCACTATTAAATAAGACGGTGGAGTTTGAGGCGGCGGTAAGGAGAGTGGTGAAGGATGTACGGTTGGATAATGACATTGTGGTGTCTGTGTTCGAGACCAACATCCGGGTGCTGGGTGGACTGCTGGGAGGCCATTCCATGGCTGTCATGATGAAAGAAAGTGGGCGAATGCTCTGGTACCAGAATGAGCTGCTGCACATGGCCAAAGATCTTGGACTCAGACTGCTGCCTGCATTTAACACCAGCAGTGGCCTGCCGTACCCTAGAGTGAACCTGCGTTATGGAGTCCGTGGACCCGAGACCCGCACAGGCACTGAGACGGATACCTGCACCGCCTGTGCCGGGACAATCATCCTTGAATTTGCAGCCTTGAGCCGCTTTACTGGGGACCCCACATTTGAGGCTCATGCGAGAAGGGCTCTTGACTTCCTTTGGGAAAAGAGACAGAGGAACAGTAATCTAGTGGGAACAACCATCAACATCCACTCAGGAGAGTGGGTCCGCAGAGACAGTGGAGTTGGAGCAGGCATAGATTCCTATTATGAGTACTTGATGAAGGCTTATATATTACTGGGAGATGACCAATTTTTGCAGCGCTTTAACACTCACTATGCATCCATTATGAAGTACATCAGCCAACCTCCTCTGTTACTGGACGTCCACATCCACAAACCCCTGCTGCCAGCCCGCACCTGGATGGACTCCTTGCTTGCCTTTTTCCCAGGATTGCAGGTGTTAAAGGGAGATATTCGGCCAGCTATAGAGACGCATGAAATGCTTTATCAGGTTACCAAGAAACACAACTTCCTTCCTGAGGCGTTCACCACTGATTTCAGGGTTCACTGGGCCCAGCACCCCCTGCGGCCAGAGTTTGCAGAAAGCACTTACTTCCTTTATAAGGCAACCAGAGATCCATATTACCTGGAGGTGGGCCGCAGCGTACTGGAGAACCTGAACCGATTTGCTCGAGTTCCCTGTGGCTTTGCTGCTATGAAGGACGTGAGGACGGGGAGTCACGAGGACCGCATGGACTCGTTTTTCCTGGCGGAGATGTTTAAGTACCTGTTTCTGCTGTTTGCTGAGGAGGAGGATTTGCCTTTTAATGTGGAGGACTACATCTTTACCACAGAAGCTCATCTGCTGCCTCTCTCCCTCTCCACTGCCTCAAACTCACAGGCGCCCCCTGTCGTCAACAACATGGCTGGAGAGGAGCTTGATGACTCAAATTTTGAGTGGACTTGCCCTAACACCCGCCTACTCTTTCCTGATCCCGCCTACCCACGCAATCTCCGTGAACCAATCAGGAGCGCAGTGGATAAGAGTTGTCCGCGCCCGACCACTCATCGAGAGCCTGGTATGGGCCGTCCTCCTCTTAGGGCTCAAGACTTCATGGCCAATAACCCCGAACATCTGGAGCTGCTGAGGCGGATGGGTGTGAGTCTCATCCACCTAAAGGATGGCAGAGTACAACTCGTTCAGCACGCAACACAGGCGGTGAGTGCAGTCGCTGCAGAGGACGGCATGCGTTTTATGCAGGAAATGATGGAGCTCTCCAGCCAGCAGCAGAAAGAACAGCTTCCTCCACGAGCTGTTCAAATTGTGTCGCACCCCTTTTTTGGTAGAGTGGTACTGACCGCAGGCCCTGCGCAGTTTGGATTGGATCTTTCCAAAAGCAGTTCTGGAGTGCGTGGGTTCGTAACCGTAGCGGAGCCCTATAACGGCTGTTCTGAGTTGAGTAACAGTGAGATTGTGGCAGGCCGTATCGCTCTGCTCCAGAGAGGCCAGTGCATGTTTGCAGAGAAGGCTAGGCACATTCAGAAGGCTGGGGCCATCGGAGGCATCGTCATCGATGATAATGAAGGCAGCAGCAGTGATACGGCCCCATTGTTCCAGATGGCGGGAGATGGTCGGAACACTGATGATGTCACTTTACCACTCCTCTTCCTGTTCCACAAAGAGGGCAATATCCTGTTGGAGGCTCTAAAGGAGTACAAGGAAGTGGAGGTGCTGCTCAGTGATAAAGCTAGAGACAGAGGTACAGATGGAGCAGAAGAAGAGGACTGCTCCACAGAGGAGAAAGACCACAGTTCCTCCACCTCCTCAGAACCTGTCGACCAATCACAAGTCACTACTCAGGAACAGACAGCAGGCGTGGGTCAAGATGCGGTTCAGCCAGTGGAGGGACTTGGCAGTTACATCCCCGTGGACGTAGGGGAGGAGCCTGCGGTGGACGGCGACTCCGGCAGCCAATCGATGGACTCGCTGATGGCTGATTGGCAGGAGGACTTGGAAGCGTTTAAGCAGATGGAGAAGGATGAGCTTTGACATTCCCCTCCATCTCGGACTCCGCTAGCACGTCCCAGCCATAGCACAGACTGAGAAATCAGTTCTGTCGAATAGGGACAATCTATCAGATAGGCGCGTTAAGAACTCTGACTCAAAGAGCTCATTTTCTACGGCCATTTCTCAGGGGCTTCATTCTGATTCACATATATCCTGTTCTCTTCATCTGAACGCTGACAAACTCTATTCCAGATTTCACCCACGCATTACAACTTATCTCTTTCTCTACATGTCTAGGGTACACAATCACTCCTGTTTTTGTCTTCCTTCTAACTAATGGATTCTCTGATTATTGAAGTGCAGGCTTAAATCATCAGTGCTGATTAATCATCTGAAGGATTGATTAATTTAATGGCTGGTTTAACTGTGATGAATTGCTTTTAGCCGTAGGATTCATATTTGGTTCTTGTCTCAGTTTCAAGGGTCTGGAACAAAAGAATATTTTAGATCCTTTATGGAATGATATATGTGTATGTTTGAGTGTTTGTATGTATGTTTATTGTTTTTAATTGTTAAGAGAATCAGCCTGGGGCTCTCATACAAATAAGACCCAAAGTTCAAAAATGCTCCTTCCACATTAAGTATTTAACGGTCTTATACATTCAGTCCACTTAATGACTTTACGACAAGGTCAATCTTTCAAAAAGAGGCATTAAAGGACCACGGATGACATCTTTGCATGTCAGTGACAGTTTTTTTTTTCCAAGAATGAAGGAGACATGTGAAGCATCCTAAAGGATCCGCCAGAGGACGCTATTGCTCCATTGCTCCTAGTAGTTAATTAATTGACTGGGAGACCATGCCAGGGGGCATGAAACGTGATAAGCTCA

Function

symbol description
edem3 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process and mannose trimming involved in glycoprotein ERAD pathway. Predicted to be located in membrane. Orthologous to human EDEM3 (ER degradation enhancing alpha-mannosidase like protein 3).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K10086 EDEM3; ER degradation enhancer, mannosidase alpha-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_03116123_03125761.mRNA True 3446 mRNA 0.50 20 3116123 3126609

Neighbor

gene id symbol gene type direction distance location
CI01000010_03017924_03021246 FAM78BA, FAM78BB, FAM78B coding upstream 93253 3017216 ~ 3022870 (+)
CI01000010_02847074_02911612 NA coding upstream 204511 2847074 ~ 2911612 (+)
CI01000010_02821021_02827050 NA coding upstream 288906 2821021 ~ 2827217 (+)
CI01000010_02805903_02806462 NA coding upstream 309280 2805662 ~ 2806843 (+)
CI01000010_02734548_02755209 RFX2 coding upstream 360332 2734548 ~ 2755791 (+)
CI01000010_03142808_03164874 CLG10H1ORF21 coding downstream 14035 3140644 ~ 3165257 (+)
CI01000010_03172010_03192359 COLGALT2 coding downstream 45401 3172010 ~ 3192795 (+)
CI01000010_03197380_03199958 NA coding downstream 70771 3197380 ~ 3200044 (+)
CI01000010_03236941_03246548 NA coding downstream 110332 3236941 ~ 3247594 (+)
CI01000010_03250114_03263566 RGL1 coding downstream 123206 3249815 ~ 3264794 (+)
G61409 NA non-coding upstream 29107 3055174 ~ 3087016 (+)
G61444 NA non-coding upstream 73641 3031757 ~ 3042482 (+)
G61784 NA non-coding upstream 90671 3023965 ~ 3025452 (+)
G61779 NA non-coding upstream 108811 3007089 ~ 3007312 (+)
G61826 NA non-coding downstream 75030 3201639 ~ 3232879 (+)
G61835 NA non-coding downstream 146185 3272794 ~ 3273005 (+)
CI01000010_03320340_03346243 NA non-coding downstream 207027 3313695 ~ 3347796 (+)
G61847 NA non-coding downstream 313002 3439611 ~ 3439834 (+)
G61860 NA non-coding downstream 444309 3570918 ~ 3571148 (+)
CI01000010_00946586_00947327 NA other upstream 2168579 945182 ~ 947577 (+)
CI01000010_00881905_00883563 NA other upstream 2232609 881195 ~ 883684 (+)
CI01000010_00826648_00831638 NA other upstream 2277691 826648 ~ 832705 (+)
G62838 NA other downstream 763486 3890095 ~ 3893793 (+)
G62856 NA other downstream 811148 3937757 ~ 3939945 (+)
G62983 NA other downstream 1321563 4448172 ~ 4449327 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005367 edem3 coding CM030140.1 CM030140.1 22104142 ~ 22112254 (-)