LOC103042295 (LOC108425305,LOC105896948,LOC105020256,LOC108279434,LOC105913407)


Basic Information

Item Value
gene id LOC103042295
gene name LOC108425305,LOC105896948,LOC105020256,LOC108279434,LOC105913407
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9986304 ~ 10032671 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232390.3
CTCCTCGCGAGAGTGCTGCAGGTTCTCGGTGGTGGAGGGAATGCAGCTTTAGAGTGGAGACGGGCAGAGAGTGTTTGTGCAGGtctgagtgaatgagagagtgagagtgagaggtagaagtgtgtaagagtgaaaggcagagagtgagagagtgtgtgaatgtgttgaaTGCAGTCTGCGGTTGCCCCTGCTTCCTCCGCGGCTCTGTGACTGTTCCACGCCGGCGCGCTGGGGGGGAGCTCGGGCAAAGGGAGCCGCGCAGTTCACCGCTCGGACCCGCGGCGCAGCGCCGGCAGAAGCAGCACCGGCAccgtcagcagcagcagcagcatgctcACCCGGGTCAAGTCCGCCGTGGCCAGCTTCGTGGGCGGCATCATGGCCGGCTCCTCGGACGGAGAGCAGCCGAGCGGCGCCGAGCTGCCCCACAAATTCCCCTACATGAGGCCGGCCTTCCTCGGACTGTCGCCGGACGAGATCGAGTGCTCGGCGGATCACATCGCGCGGCCCATCCTCATCCTCAAAGAGACGAAGAGATTACCGTGGGCTACCGGCTACGCAGAGGTGATCAATGCAGGGAAGAGTGCTCTAAATGAGGACCAGGCCTGCTGTGAGGTCATCATGGTGAAGAAGAAGCCCGGAGCACCGTCCACACCCAGCAAAACTCCCACAGCCAAAAGGAGGTCATCACTGCCCAACGGAGAGGGCCTGGGGCTCAGAGAGAGTTCAGAGTCTGATGGGTTACTCATTCATTACTGGGCTCTGTTTGATGGACACGCTGGATCAGGCGCAGCAGTCATGGCCTCCAAACTGCTCCAGCAGCACATCATAGAGCAGCTGCAGGACGTCCTGGACATCCTGCGTAACCTGGGCTCGCTCCCCCCCACCGTACTGGGAGAAGAGCCCAACCACCCGGGAACCCCCGGCACCAATCGCACCCTGACCCGAGCCGCCTCCCTCCGCGGTGCTGCAGGAGCTCCCGGCTCACCCAGCACCCCCCCACCCCGCTTCTTCACTGAGAAGAAGATCCAGCACGAGAGCCTGGTGATCGGAGCTCTGGAGAACGCTTTCAAAGACATGgaTAGTCAGATCGAGAGGGAGAAAGCTGTGTATAATATATCTGGTGGATGCACTGCGCTGGTGGTGGCCTTCATTCTGGGAAAGCTGTACGTGGCCAACGCTGGGGACAGCAGAGCCATCATAATCAGGAATGGGGAGATCATTCCAGTGTCTGCAGAGTTCACCCCTGAATCAGAGCGGCAGAGGCTGCAGTTCCTGGGTTTCATGCAGCCCCATTTATTAGGAGGAGAGTTCACACACCTGGAGTTCCCGAGGAGAGTACAGAGGAAGGAAGTGGGGAAGAAGATGCTGTATCGGGACTTCACCATGACCGGCTGGGCGTACAAAACCATCGAGGATGAAGACCTCAGATTCCCCTTAATATACGGCGAGGGGAAGAAGGCTCGAGTGATGGCCACAATAGGAGTGACCCGTGGTCTAGGAGACCATGACCTCAAAGTCCATGACTCCAACATCTACATTAAACCGTTTCTGTCCTGCTGTCCAGAGGTGAGGGTGTATAACCTGACGCAGTATGAGCACGGAGCTGATGATGTGCTGGTGATGGGCACGGATGGCCTGTGGGACGTCCTCTCTAACGAAGAAGTGTCAGAGTCTGTCACCTCCTTCCTCGCCAACTGTGACCCAGATGACCTGCACAGGTACACCATGGCAGCCCAGGACCTGGTGATGCGTGCCAGGGGTGTTCTCAGGGACCGAGGCTGGCGTATAACCAACGACCGGCTGGGCTCTGGAGACGACATTTCCGTCTACATCATCCCCCTCATGTATGGTAACCGTCAACCATAGAGCAGATGCTTCTGCAGTGACCCCTGCTATCTCACTTTCACactcctatacacacacacacacacacacacacactcactcatgcaCTCTTGCACGCACACAGACTGAGAACCTCTACTTGTCCTGCTGTGTTCCtctcagtgcagtgcagtgcagtaagGGATTAACTGAATTGTTCAGCAACTCACTGcagtgtacagtgtacagtgttgTTTATACTGGCATGAGAGGATAAAATACAAAGCATTTGTATGCCACTTAATTATGTAACGTATATAGAGATCCTAGTTAGACTGATTCCTGACACTTTCTACATTGCCACTGCAtgatatgtaatgtaatgtttttattatggaTCATTTGACTGAAGTACACTGatttcttctgtttattttttatgccgATTGAAGGCAGAGCTCTTGCTACCCCAGTTTAGTACTGTTCACATGTTA

Function

NR:

description
PREDICTED: protein phosphatase 1H-like

GO: NA

KEGG:

id description
K17503 PPM1H, ARHCL1; protein phosphatase 1H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232390.3 True 2321 mRNA 0.55 10 9986304 10032671

Neighbor

gene id symbol gene type direction distance location
LOC103036113 LOC108279889 coding downstream 98816 9865360 ~ 9887488 (-)
fbln1 NA coding downstream 122285 9850930 ~ 9864019 (-)
arhgap8 arhgap8 coding downstream 526610 9435114 ~ 9459694 (-)
nup50 nup50,LOC107699201,LOC107719874,LOC107562145,LOC107601009 coding downstream 719425 9252337 ~ 9266879 (-)
LOC103042700 LOC108425355,LOC108279935 coding downstream 759056 9223714 ~ 9227248 (-)
creld2 creld2 coding upstream 362259 10394930 ~ 10405872 (-)
zbed4 zbed4,LOC107735570 coding upstream 391918 10424589 ~ 10433454 (-)
LOC103026034 gramd4,gramd4a,LOC108427081,LOC107721158 coding upstream 1691796 11724467 ~ 11779849 (-)
LOC111192951 LOC108427081 coding upstream 1747884 11780555 ~ 11805577 (-)
LOC103026753 LOC108427079 coding upstream 1792175 11824846 ~ 11965807 (-)
G63136 NA non-coding downstream 69682 9914565 ~ 9916622 (-)
G63131 kdm5a non-coding downstream 77056 9907553 ~ 9909248 (-)
G63125 NA non-coding downstream 94546 9891016 ~ 9891758 (-)
G63107 NA non-coding downstream 336116 9647552 ~ 9650188 (-)
G63105 NA non-coding downstream 344064 9637688 ~ 9642240 (-)
G63169 NA non-coding upstream 40887 10073558 ~ 10074137 (-)
G63170 NA non-coding upstream 41558 10074229 ~ 10074477 (-)
G63171 NA non-coding upstream 45008 10077679 ~ 10077995 (-)
G63175 NA non-coding upstream 63428 10096099 ~ 10096842 (-)
G63183 NA non-coding upstream 101525 10134196 ~ 10135349 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 363516 9618661 ~ 9622788 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 1812488 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 2366872 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 3126634 6787342 ~ 6859670 (-)
LOC111192938 NA other downstream 3253179 6727874 ~ 6733125 (-)
G63217 NA other upstream 282128 10314799 ~ 10411231 (-)
G63516 NA other upstream 2287884 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 2332797 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 2773300 12805971 ~ 13027498 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 3808522 13841193 ~ 13887868 (-)

Expression


Co-expression Network