guca1a (guca1a,LOC107590762,LOC107755893)


Basic Information

Item Value
gene id guca1a
gene name guca1a,LOC107590762,LOC107755893
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19732755 ~ 19738419 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232707.3
ATGCCCCAGTGTAACCCAGCTGTGAGACGCGAGCTCTTCGCCTGCACAGCAGAACCACTGGGCTTCCAGAGCTTCTACTGATCCATTcctgatcagatcagatcagatccaTACTCTTCAGTTCTCCTTCTGCTCACTCCTCCAGTCCTCAACTCCAGTGATGGGGAACTCTACCGGCTCCACCGTGGACGACCTGCAGGCTGTGGAAATGCACCTGTGGTATAAGAAGTTTATGACGGAGTGTCCGTCGGGTCAGCTCACGCTGCACGAGTTTAAGCAGTTTTTCGGGCTGAGGGGTTTGGACCCGGAGGCAAACGCATACATTGAACAGATGTTCCGAACCTTTGACATGAACAAGGATGGGTACATAGACTTCATGGAGTACGTGGCAGCTCTGAGCCtggtgatgagaggaaagatgGAGCACAAGCTGCGCTGGTACTTCAGACTGTACGATGTTGATGGCAATGGCTGCATAGACAGACACGAGCTACTCAACATCATAAAGgcTATCCGAGCCATTAATGGCAGTGATGCACAGGAGCTCTCTGCAGAGGAGTTCACAAACCGTGTCTTCGACAAGATTGACGTTAATGGCGACGGTGAGCTGAGTCTGGAAGAGTTTGTGGAGGGAGCTCGCAGTGATGACGAATTCATGGAGGTGATGGTGAAGAGTCTGGACCTCACGCACATCGTCGCCATGATCCACAACCGCAGACACAgcatataaacattaaatacaaCCTTTTCTCACTATAAGTACTGGCAGCAAGCTAAATGAGCCCAATAAGTGTAAATTACATTTCTTAGTAACTAAGAACAACATCCATTTAACTGCTGCCTAGATTACCAACTACAGAATGActcaaaacaacataaaaaaagaacgATGTTTGGTTACTTAAGCAACAATGGTGCAAAAGACTTGGCTCATTGGTCAAGAGCAACAATCATTTGTTGCATAGCAAAAGATGCCCAGATAAAGTAGCTCACAACAAGCAGTTGGTTGTTGCTTAGCTTACAGGCctcagaatgaaaaaaaaaaaaaaaaaaaactttcctagGTGACAACAATCCTGCCTGGAAATGGTCAAAAACAACAATTGTTTTTTCCAAAGTTACACCTCTCATTAACCTAGCCCAAAACAGAATGAACAAATTTACCAGTCAAGAGCAATAATGatctctgtttatttgtttgtttcaataaaaaggCTGGGATGAAAGTGAAGGGGTGCATTCAAGATCTGGAAATGGACCACATTAACATTACTGACTGTTTCCACGATATAGCCTGTTAGCAAGCCACATGCTAAAGCTGTGAGGGAAAAGAATCAGTAAGTTAATGTTAATGTCCATCTGCTTAAAAATCTAAACAGACTTAAACAGTCCACACTTTCGGCCAAATGTCTtcaatatttatgtatattttttatgtatttaattattattatattaatacactGTTACTTTACTCTAGCTTATTAAGTGAAAatagcttaaaataaaaatgtttctacTGTTATTCAGGAAAAACAAAAGCTCAGGTCAAGAATGTTTACTTCTGTATAGTAGGTAGCCTCAACGGCTAAAGGCTAGAAATCATAATGTAaagtgaaatgttttaaatgtatttttttttgtacattttcaaaCAAAATTGGGTTGTTTTGTTAAATTACAACTCTTACAGTGTCCGTTCTGTAAATCAGAGCTAGTCCCAGTATTGATGTGCCTTCTGTAACAGCACAACAGGACGTTTGGTTACGTGGACGACCTGCTGATGTTGATCATTTCTATAATAAAA

Function

symbol description
guca1a Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Is expressed in eye and retina. Human ortholog(s) of this gene implicated in cone-rod dystrophy 14. Orthologous to human GUCA1A (guanylate cyclase activator 1A).

NR:

description
PREDICTED: guanylyl cyclase-activating protein 1-like

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0005509 calcium ion binding molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG:

id description
K08328 GUCA1; guanylate cyclase activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232707.3 True 1807 mRNA 0.41 4 19732755 19738419

Neighbor

gene id symbol gene type direction distance location
lhfpl3 lhfpl3 coding downstream 18312 19665559 ~ 19714443 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding downstream 217372 19409298 ~ 19515383 (-)
LOC103035518 nptx1l,LOC108435874 coding downstream 611295 19111133 ~ 19121460 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 1014125 18717502 ~ 18718630 (-)
tspan10 NA coding downstream 1142685 18586569 ~ 18590070 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 315532 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 444675 20183094 ~ 20189701 (-)
myf6 myf6 coding upstream 463679 20202098 ~ 20205655 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding upstream 784436 20522855 ~ 20810711 (-)
nav3 nav3 coding upstream 1244733 20983152 ~ 21356508 (-)
G65339 NA non-coding downstream 60638 19669547 ~ 19672117 (-)
G65277 NA non-coding downstream 120877 19610935 ~ 19611878 (-)
G65276 NA non-coding downstream 122266 19609454 ~ 19610489 (-)
G65279 NA non-coding downstream 126254 19606290 ~ 19606501 (-)
G65273 NA non-coding downstream 139642 19592294 ~ 19593113 (-)
G65342 NA non-coding upstream 8466 19746885 ~ 19749668 (-)
G65354 golgb1,LOC108279640 non-coding upstream 29763 19768182 ~ 19769869 (-)
G65359 LOC103037311 non-coding upstream 54364 19792783 ~ 19793144 (-)
G65363 NA non-coding upstream 65887 19804306 ~ 19805426 (-)
G65364 NA non-coding upstream 67101 19805520 ~ 19806601 (-)
ndufb2 ndufb2 other downstream 127030 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 362047 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 448723 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 709097 18898185 ~ 19023658 (-)
LOC111192971 LOC108435850 other downstream 1082412 18638307 ~ 18650343 (-)
llph llph other upstream 56735 19795154 ~ 19799602 (-)
ost4 NA other upstream 1806999 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 1891539 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2552266 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 3314854 23053273 ~ 23160179 (-)

Expression


Co-expression Network