orc5 (orc5)


Basic Information

Item Value
gene id orc5
gene name orc5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19715788 ~ 19728171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232708.3
AACACGTGTtcacaataaatacattgttaTTTAGAAATATACAGAAACAAGCGATTGAAACTCGCTACTACAAATCTCCGCGTCTAAAAACTACAACTCCCAGCTTGCGGATGTGACGTCACCTTGGCGGGAAAGTGAAGCAGCGTGTGGAtcctgtgtgaatgagtgtgtgttggggtttctggctgagtgtttataaaatTGAGGAGGATGCTGGCTGGACTGCAGTGTCCCGGCTATCCTGAAGCCAAACTAAGCTCTGTGAGCGAACGGCTTCCCTGTAGAGAGGGACAGGCAGGAACGCTGCTGGCTCTAATGGGGGAGCCGGAGCAGTACTGCTTCCCCTCCATCTTTATCTATGGCCACCGAGCCACGGGGAAGAGCCATGTGATCCTCACCCTGCTGAAAGAACTGGAGgttcCTCATGCAGCGGTGAGCTGTGTGGAGTGTGTATCTGCAGGGCTGCTGTTTGAGCAGGTTCTGTTAGCGATGTTTGGTTCCGAGTCGGCCACTCTGCTccctcgctctccctctctctcagacttcgTTCGGATCTACAGGCAGTTCTGCGCTCAGGAACCGGCCCAGCAGACCCGGTACATTGTTCTGGAGAGAGCGGAGCTGCTCAGAGATATGGAAGCCAACCTGCTGCCTGGACTGCTACGTCTACAGGAACTGGTGGATGATAATGTGACCGTCATCCTGCTGAGTGAGATCGTGTGGGATAAGTTTCGGCCGAACACTGGCTGCTTCGAGCCTCTGCTGCTACACTTCCCTGATTATACTAAAGCGGAGCTGCTGCAGATTCTGTCTCTGGACAGTAACCCATCCTACTCTCCTGAACTCTACTCCTCCTACATCAACATCCTGCTGGGGGTCTTCTACTCCGTCTGCAGAGACCTGAGAGAACTACGCCACCTGGCTGCCCTCAATTTCCCCAAGTTCTGTGAGCCTCTAGAGAAGGGAGAAGCTAAAGAGAGCGACACCCACAAGCTCTGGAGGAACATTGAGCCTCACCTGAAGAGAGCCATGCAGACCGTGTACCTGAGAGAGGTGTCTAGTGTTCAAtgggagcagcagcagatgGAGGAGAAGGAGGCCACAGCTCTTAgagGTTTATCAGCTCATGCTCATGTGGAGTTACCGTATTACTCCAAGTTCCTGCTGATCGCGGCATACCTGGCCTCGTATAACCCGGCCCGGACCGACCGACGCTTCTTCCTCAAGCATCATGGGAAAATTAAGAAAACCAATTTCTTGAAGAAGCATGAAAAAACTAGTAACCATCTGTTGGGACCGAAACCATTTCCTCTGGACAGACTGTTGGCCATCTTCTACAGTGTGGTGGATAGCAGAGTGGCGCCAACTGCCAGCGTCTTCTCCCAGATTTCCTCTCTGGTCACCCTGCAGCTCCTCACCCAGGTCGGACACGACGACCAGCTGGACTCTCCCAAATACAAGTGTGCTGTTTCACTGGACTTTATTTCTGCTAtctccagGACCGTGAGCTTTGATATTGTGAGATATCTGTATGACTTCCTGTGAAGAATCTGACCACTGATTGGACAGTGTTTTGGGATCACCCTGATGGACAGATCAGCAAGTTGGCAGGAAAATGGACTACAAGCATTTTAATTGGCTGATACCTAAGACATGGAGACCATATTTCATGACTGTTGGATAATGTCATCTTACCTGCCATCAGATTTACTTTAGACCTGATTTAGGTGTAATAAAGACTTCCTGTAGCTACTTAAACTTCATGCAGaggtacatatttatataatgtgttttttacttGGACATTGCATTTCTGATTACAGCTAATGTTTAGCTGAAATAAGAGCCATTATATGTTTGTGATTTTGGTGATAGTGAAATTTTCACTGTAAACATTGATAaacaatttgtaaaaaaaaataattaataaatgactaaatattgcatttacattttca

Function

symbol description
orc5 Predicted to enable DNA replication origin binding activity. Predicted to be involved in DNA replication initiation. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Orthologous to human ORC5 (origin recognition complex subunit 5).

NR:

description
origin recognition complex subunit 5-like

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0000808 origin recognition complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K02607 ORC5; origin recognition complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232708.3 True 1958 mRNA 0.48 15 19715788 19728171

Neighbor

gene id symbol gene type direction distance location
kmt2e kmt2e coding upstream 55268 19615610 ~ 19660520 (+)
LOC103040257 kdm7a coding upstream 117739 19569986 ~ 19598049 (+)
cd36 NA coding upstream 316568 19368514 ~ 19399220 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding upstream 410331 19286835 ~ 19305457 (+)
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding upstream 443941 19268422 ~ 19271847 (+)
golgb1 NA coding downstream 21139 19749310 ~ 19779463 (+)
ppfia2 ppfia2 coding downstream 111024 19839195 ~ 20054048 (+)
lin7a lin7a coding downstream 426884 20155055 ~ 20173304 (+)
rps16 rps16,LOC103382554 coding downstream 534409 20262580 ~ 20266197 (+)
ppp1r12a ppp1r12a coding downstream 571531 20299702 ~ 20397967 (+)
G65183 NA non-coding upstream 103916 19610912 ~ 19611872 (+)
G65182 NA non-coding upstream 105267 19609465 ~ 19610521 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding upstream 114150 19600888 ~ 19601638 (+)
G65178 NA non-coding upstream 121565 19593911 ~ 19594223 (+)
G65150 NA non-coding upstream 458205 19253483 ~ 19257583 (+)
G65301 NA non-coding downstream 2306 19730477 ~ 19730879 (+)
G65306 NA non-coding downstream 15713 19743884 ~ 19747191 (+)
G65310 NA non-coding downstream 75004 19803175 ~ 19805102 (+)
G65311 NA non-coding downstream 76455 19804626 ~ 19806600 (+)
G65404 NA non-coding downstream 423062 20151233 ~ 20151557 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 374909 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 436271 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 437717 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 1092289 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 1995876 17690209 ~ 17719912 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 52492 19780663 ~ 19794325 (+)
G65565 NA other downstream 1228964 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 1296004 21024175 ~ 21024574 (+)
agbl5 NA other downstream 1712238 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 1901616 21629787 ~ 21715437 (+)

Expression


Co-expression Network