lhfpl3 (lhfpl3)


Basic Information

Item Value
gene id lhfpl3
gene name lhfpl3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19665559 ~ 19714443 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232709.3
tgcgtgtgtgtatgtgtgtgtgtgctgtatgcTCTCCCTGTCATCTCGGCGCGCGTGCTTCAGTGCTTCAGTCCAGGACAcattttagagagagagagagagacagagagacagagaaacataGAGGTGTATATATACAGACAGAGGTAGAGCGAgttagagagatagacagagggagagagagagacggtgtGTGTTTCTGACCAGAGATGGGCTCCAGAGGCTGCAGAAGCTCATCATCTTCTTCATTGCTGCAGCCTGGAAGATGCTATTTTTCACCACGTGAATAATGAATGGGGCACTCATGGCTGACCACTCTgcattttaatgctgttttcagGGATTCATCTGTCATTTTTGGCTGAGATGAGAGCAGGCTGCTGTGGGAGCGGTGGTGCTTTGCTGTTGAAGAATCTGTAGAGCAACAAGGATGCAGGATTTCTGGACATGATATGAGATGTTTGAGGCATGATGGTGTGAATGAGAAAACAAACACCAACCCCTTGATTTATTTGCAACCGATaagcaaagaaaagaagaaagaaaacaacCCGAATCAAAATCAGTTAATGCACCGAATCATACTAGTGACACCTGATTATACCACAAGCTTCCACGACACGATTCCACCAAGTCTACCCCAGCTTCTGGTGCTGTGCAGCTCCAGCTCCACGAGGTCTGCATCCAGGCGATGGTCCCTGGAACACCAGCAGCCATGCTCCCCGCTTCAGAAGCCGCTAAAATCTACCAGACCAACTACGTGAGGAACTCCCGAGCCATTGGAGTTCTCTGGGCCATCTTCACCATTCTCTTCGCCATCGTCAACGTGGTCTGCTTCATCCAGCCCTACTGGATTGGCGACGGGGTGGACACCCCCCAGGCCGGCTACTTCGGCCTCTTCCACTACTGCATCGGAAACGGACTGTCACGAGACCTCAAGTGCTACGGCAGCTTCACCAACTTCAGCTCCATCCCTTCGGGTGCCTTCAAGGCTGCTTCCTTCTTCATCTGCACCTCTATGGTCCTGGTGCTCACCTGCATCGCCTGCTTCgccctcttcttcttctgcagcACTGCCACCGTCTACAAGATCTGCGGGTGGATGCAGCTGGCGGCAGgtacGTGTCTAGTGTTGGGATGTCTGATCTATCCGGACGGTTGGGATGCGGATGAGGTGAAGAGGATGTGCGGGGAGCAGACGGATAAGTACACTATTGGAGCGTGCTCAGTGCGCTGGGCCTACATCTTGGCAATCATGGGCATCCTGGACGCCCTCATCCTCTCCTTCCTCGCATTCGTCCTGGGCAACCGGCAGGATGGGCTCATGGGGGAGGAGCTTCTGGGAGACAGTTGATTCTGCCCAGTAAAGGAACCCGATTTAACGTTAAGTGATCCAGCTTATCATCCTATGCGTGGGTGTTTGGAGTGTCCAATGGATTTTGGAGCAAATGAAGGAAGTGAGGAatgagaaaggaaagaaaaggttAATGGTGCCCATTTTCTGCCCACACTGACCACTGCCCACCTTCTACTGAGGAAGAATATGGATTTAACCCTTCATCCACTGGTTTCAGCGCAGAATGGAGGAATGAAAACAGGGTCGTGTGACCATTATTTCATCAACGTACATCTTAAATTACACTATTCACACCCATCAcatctgtttttatatttctctttgttacacacacacacacacacacacacgcaaaacatttacttaatattagcTCTGAGCTGAAATACACTAAATGTTTTTGGACCACTTtgcactctaaactctaaaccaaACCTGAAACAAACTGTAGTGTGGACGGCTGTAGCTTGGACTTCTGGACTACTAGACTCTCCCCTGCACCCCACAGCTTCTGCAGTCTTTACCACCACAGAagggtgccaatacttttgttcagaTCTGAGTAATGGCTcttaataagaagaaaaacattgtgATGATGTTCTGCAGGACTCAACCTGCTTGATCTGGCTCTGAGACATACTGATCTTAAAAACAACagggaaaaaatgaaaatatttatatgtgtgtgtgtttaggacaaaaaccttgtatctccaaaaaaaaaaacatttttgaatt

Function

symbol description
lhfpl3 Predicted to be involved in sensory perception of sound. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in central nervous system. Orthologous to human LHFPL3 (LHFPL tetraspan subfamily member 3).

NR:

description
PREDICTED: uncharacterized protein LOC106592871

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232709.3 True 2098 mRNA 0.48 4 19665559 19714443

Neighbor

gene id symbol gene type direction distance location
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding downstream 150176 19409298 ~ 19515383 (-)
LOC103035518 nptx1l,LOC108435874 coding downstream 544099 19111133 ~ 19121460 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 946929 18717502 ~ 18718630 (-)
tspan10 NA coding downstream 1075489 18586569 ~ 18590070 (-)
LOC103028209 NA coding downstream 1090390 18567677 ~ 18575169 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding upstream 18312 19732755 ~ 19738419 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 339508 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 468651 20183094 ~ 20189701 (-)
myf6 myf6 coding upstream 487655 20202098 ~ 20205655 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding upstream 808412 20522855 ~ 20810711 (-)
G65277 NA non-coding downstream 53681 19610935 ~ 19611878 (-)
G65276 NA non-coding downstream 55070 19609454 ~ 19610489 (-)
G65279 NA non-coding downstream 59058 19606290 ~ 19606501 (-)
G65273 NA non-coding downstream 72446 19592294 ~ 19593113 (-)
G65271 kdm7a,LOC106573199 non-coding downstream 77101 19580127 ~ 19588458 (-)
G65347 NA non-coding upstream 12864 19727307 ~ 19849574 (-)
G65342 NA non-coding upstream 32442 19746885 ~ 19749668 (-)
G65354 golgb1,LOC108279640 non-coding upstream 53739 19768182 ~ 19769869 (-)
G65359 LOC103037311 non-coding upstream 78340 19792783 ~ 19793144 (-)
G65363 NA non-coding upstream 89863 19804306 ~ 19805426 (-)
ndufb2 ndufb2 other downstream 59834 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 294851 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 381527 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 641901 18898185 ~ 19023658 (-)
LOC111192976 NA other downstream 953039 18624875 ~ 18712520 (-)
llph llph other upstream 80711 19795154 ~ 19799602 (-)
ost4 NA other upstream 1830975 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 1915515 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2576242 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 3338830 23053273 ~ 23160179 (-)

Expression


Co-expression Network