LOC103040257 (kdm7a)


Basic Information

Item Value
gene id LOC103040257
gene name kdm7a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19569986 ~ 19598049 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232716.3
TAACCCTGCGCTCGGCCGCGGAGAGGGACAGGAGAAGATGGCTGCTGCCCAGCTGTACTGTGTGTGCCGGCAGCGCTACGATATTAGCCGGTTTATGATCGAATGCGACATTTGTAAGGACTGGTTTCACGGCGGATGTGTCCAGGTGGAGGAGCATCATGCAGCTGATATTGACCTCTACCACTGTCCCAACTGTGAACCCATCCACGGACCCTCACACAtGAAGAAGAGGAATAACTGGCACAGGCATGATTACACAGAGCCGGATGATGGCACTCTGCCAGTTCAGGCTGGAACAGCCGTCTTCATTAAGGAGCTGCAGGAAAGAACTTTCCCCAGtgctgatgAGATCCTGGTGCAGATGCAGGGCAGTCAGGTGACTCAGCATTTCCTGGAAACAGAGGGCTTCCACTACCCCATAACAGTCGCAGACATGGAAGGACTGGGGCTCAAACTGCCCCCGCTGTCCTTCTCTGTCACAGACGTGGAGCAGTATGTGGgtGGGAATAAAGTCATCGATGTGATTGACGTAGCCAGACAGGCAGACAGTAAGATGAAGCTGAGTGAGTTTGTGAAGTATTATTATCAGCCAGAGCGGCCCAAGGTGCTGAACCTCATCAGCCTGGAGTTCTCAGATACTAAGATGGCAGAGCTGGTGGAGGTTCCAGATATCGCTCGTAAAATGTCCTGGGTGGAGAATTACTGGCCGGATGACTCTTTCTTCCCTAAACCATTTGTGCAGAAGTACTGCCTGATGGGGGTAAAGAACAGTTACACAGACTTCCACATCGACTTCGGAGGAACTTCAGTGTGGTACCACGTTCTCTGGGGGGAGAAGATTTTCTACTTGATCGAGCCAACTAAGGCTAACCTTGCACTATATGAGTCTTGGAGCTCGTCGCCCAATCAGAGCGAAGTGTTCTTCGGGGAGAAGGTGGAGAAGTGCTATAAGTGTGTGGTGAAACAGGGGACCACTGTACTTCTGCCTACAGGCTGGATCCATGCTGTGCTCACCTCTCAGGACTGCATGGCTTTCGGTGGGAACTTCTTACACAACCTGAACATAGGCATGCAGCTCAGgtgttatgaGATGGAGCGGAGGCTGAAGACTCCAGACCTTTTTAAATTTCCTTATTTCGAGGCCATCTCCTGGTACGTGGCCAAGAACCTGCTAGAGACACTGAAAGAGCTGCGGGAGGAGAAGTGCCAGCCTCAGGAGCATCTGGTGGATGGAGTGAAAGCTTTAATCTCTGCACTGAAGACCTGGCTCAGGAGAGAGTTAACAGGACCCAGCAGTGAGGTTCCAGATAACATCAAGCCCACCCTTCTCATCAAGGAGCTGACCAAGGAAATACGCCACCTAGAGGAGGACTCGAGTCCAGTAAAGACAGTGAAATCTCAGGGAATGTCCTCAGAGTGTTTGTCCACACGCTCCGCTCTGGAGAGACAGTGCCAGGTGCGACGGGCAGCTCGAAGGCTCCGGGAGCACCGCCATCATCACCgccatcgtcatcatcatcatcatcaccatcatcatcgaCACCGCCATCAGCAGCACGCCAAGCCCACCTCCAACCTGGACATCCTGGAGCTGCACACCCGGGAGGTTCTCCGCAGGCTGGAGGTCGGCCCTCTGGAAGAGCAGGGTTCAGACTTCGGCTCCAAGACGAACGGCAAGTTCAGGAGGATCATCATGACGTCTGCTGTAACTGTGAAGAGGAGTCCTGATAACGCCCTGCGGCTGGTGATGTGTAATGGACGGATCATACGagagaggaggcggCTTGCCAGTGTAGCACTGAAGCATGAGCGAGACAAGACCTTGCCATGCCAGCAACACCAGGTCAAAGCAGAAAAAGCATTACCATGCCAACAAGATGGAGTGAAAAAGGAGAGCTCCTTGGAGGTGGAGTTAGAGACACTGTGCACTGTGAAAGCCACCAATCACAAACTCAGGACAGAGCTGCTGAGCTCAGGGTCGAACCTGCAGTCAGATAAAGTTGAGGCAGCCAATGCAGAGAAGCACTCTTCAGATTCAGGAAGCTCAGAGGATGaagagtgtgtgagacagaAGAGGAAAGGCTCAGGGAGCCAAACCAGCCAGTACCACAGATCACTAAAACGGGAACGGCCTACCTCACCCAGCCCGGAGAAGGCCCTGCAGGGCGTGCTGTCTGTGGCAGGCCTGATGTGCCAGCAGATGCCAGAGGAGGGCACAGTTTCTCAGGAGGCCTGGTGGTCCAACCAGACCAGCAGCAATGAGGCTGCCAGTCCGGACAGGGCAACAGGAAGTCCAGGAGAGGAATATTTATACCGGGAAAGCTCACTGTCACCCCCACTCCACCCCACCAAGAGACACGCCCACAACCCCAGCCCCATCAACAACCAGGCCACTAAAGGCAAGCGTCCCAAAAAGGGCATGGCAACAGCCAAGCAGAGGCTGGGGAAGCTCCTGAAGATGAGCAGACACACAAGCCTGCTCGTGTAGCATGACTGGGACCAgagcacacactcatacactgaCAAACACCCACACCACCTTTTCTCtctacctaacacacacacacacaaaacacatacaTGCAGCACTCTAAATGTGCATGTTTAGGTGACAAGGTATGTTTGAATGGCACTAGCATGCTGCTTCACAGCTCATATGGAGCGAATGACACGGAAAATGGAAAACGTCCTCAAAAACAGTGCAGGGAAATTTTAATCACGCATTTTGaaataggaaaaaaacataaaaaacataaataaaaatagcctaAAGTTTCTGGGTGGGTCTCCAAAGCTCAGAGGCTGAGGTATTGGTAATAGCACAGGCTGCTGTACTCTGTTGAGACCTGCAGGACTATGTGCAGTGGTATGGCCAAAGCTGTGTTTTCCAATTCAGCCAATCCTTCAGCTTCAAACCTCCTTTTATACTGAAATTTGTAGATTTGTCACAGTTCGGCTTGGCCAGAGTGTGATCTCCTCCCTCTCCTACCTCCATACTGTTGTGTAGCATAAGTGAAAATGGTGCTTTTTGGGCCGAGGATGGCTTTTTCGTATTTTTTCAAAGCCTGGTTCAGGGCGTATCttctttttttggtcttttttttatctctctgtctctctctctgtctctctctctttctgtccctgTCTCCTCATCGCTGACTACCTTCATCCTCTCTAGCTGTTGTCTGTGGCTGTGAATGATGAGCTTAAAAAGACTTGAGGGCCGGAATTtcctgtatttatgtttttaatggagAATCTTATTCTGATCTCCTTAATTCAGTTCAAAGCGAACTCTAATTCTGGTGGGAAAGCCGGCCTGGAGGTTTCTAAATGGTGCTGAACGTTTTGGAAGCTCTACACCACTATCCTTTCAAACCCTTGGAGCAATAATTGTACagtgttgattggttggtttgtttgttttattgattgattgattgattgattaacagATCTGTTGACAGATCTGTTGGTTATGTTATGTTCACAGGCAGCACCCCCACAGAGCTAGTCCTGTCTGATCCTATAGTTATTGTTATAGTAGTAGGTAGCTAACCATTAAGCACAATTTTTAAGGGGAAGTTCACTGATTTTTATGAATTTCTCTATAATTATGGGTTTTGATCAATTTGATATGAAATACACTGTTTATATAGATGATGATTAtggtaaaatactaaaaaaaatctgaccaaAATTGTTGGTTTCATTGGGGACTATTTTGGTGCGCAATGCCCTGAAACGTTATATGTATCCATCCACTCTTTCATTGATTTGTGATCTATTTTATAACTGTTCTATGCTTAAAATGTTACCAAATCTCTTGTTGGACTGCCGTGGTCACCGAAATGGATCCCCGTTCATGTTTTAATGTACTTTGTGTGATTGTGAGGGCACTGTAAACTACCACAATTCACTCATAATTAATTGTAAACACTATTAGTAAATAATTTGGATTTTGTGTGGGCTAgtaatgagggagtagggatCCAGTTTTATCTTTACTATACTCATTAActtattagtatttttaatttgtttgcaAATGAggaacacctttttttttttttttttaaatcttctcCAAAACTTCTGAAAAGCTCTGGATTTGCCCTTTACCGTAGCACTGGGGTTATCTGCTGCCACCCTGCGGACAGACAGGTAAACTGCAGTGGGTGGTGCTgccttgtatttttttctgctgtgtttAGACTGTAAGGAATTCAGTGAGAGCATAAGAGCTCAGGGAGAAATGACATCATTTCCTGCCtaatttgtgttattattttttccttcaagtgttttaaatgtaaatgttttctgtgttttttttttcttatttgttgGCTGTTAACTTATTAATTTCTAAGAGatgaaaaatgatgaaaatgatTTATGACATTCTGCTATAAGTGCTTCCTGCTATAAGGGTTGCTCttggatttatttgtttttccccgtttgcttgttttttgttgatgtaaataTGTGAAATTTCGAATGCGAGCGGGGACTTTATACGAGCAATGAAATTCACTGATCTTCACAGCGTTTTGTAGACGTCTACTTTCGCTCATTTGAAGCATAAGATTTGATGTACTCAAGGTTTTTGCTAAACTGTGCtgtaactaatgattattttaatttgggACGTCCTCAGTGCCTGTTCTCTGACTATTCCTCATCAAGAACAGCCAAAACTAATGAAAACAATCTGAATACAGGTGAAGCTGCAGGTGTTCTGGTTTGCTtgagtttgagtgtgttttggaTGAAAGATGATAGTGTGTTTCTCAGGGAACAAGCGACGTACCATCTTTAATTTCACCACCAGCATCATTCACACTCTCGTTATGAGCCAGGCTcgttaacttttatttataattctGTAAACGTATCTCCTGTCTgccatgtgtaacaatgtgatTCTGA
>XM_007232717.3
TAACCCTGCGCTCGGCCGCGGAGAGGGACAGGAGAAGATGGCTGCTGCCCAGCTGTACTGTGTGTGCCGGCAGCGCTACGATATTAGCCGGTTTATGATCGAATGCGACATTTGTAAGGACTGGTTTCACGGCGGATGTGTCCAGGTGGAGGAGCATCATGCAGCTGATATTGACCTCTACCACTGTCCCAACTGTGAACCCATCCACGGACCCTCACACAtGAAGAAGAGGAATAACTGGCACAGGCATGATTACACAGAGCCGGATGATGGCACTCTGCCAGTTCAGGCTGGAACAGCCGTCTTCATTAAGGAGCTGCAGGAAAGAACTTTCCCCAGtgctgatgAGATCCTGGTGCAGATGCAGGGCAGTCAGGTGACTCAGCATTTCCTGGAAACAGAGGGCTTCCACTACCCCATAACAGTCGCAGACATGGAAGGACTGGGGCTCAAACTGCCCCCGCTGTCCTTCTCTGTCACAGACGTGGAGCAGTATGTGGgtGGGAATAAAGTCATCGATGTGATTGACGTAGCCAGACAGGCAGACAGTAAGATGAAGCTGAGTGAGTTTGTGAAGTATTATTATCAGCCAGAGCGGCCCAAGGTGCTGAACCTCATCAGCCTGGAGTTCTCAGATACTAAGATGGCAGAGCTGGTGGAGGTTCCAGATATCGCTCGTAAAATGTCCTGGGTGGAGAATTACTGGCCGGATGACTCTTTCTTCCCTAAACCATTTGTGCAGAAGTACTGCCTGATGGGGGTAAAGAACAGTTACACAGACTTCCACATCGACTTCGGAGGAACTTCAGTGTGGTACCACGTTCTCTGGGGGGAGAAGATTTTCTACTTGATCGAGCCAACTAAGGCTAACCTTGCACTATATGAGTCTTGGAGCTCGTCGCCCAATCAGAGCGAAGTGTTCTTCGGGGAGAAGGTGGAGAAGTGCTATAAGTGTGTGGTGAAACAGGGGACCACTGTACTTCTGCCTACAGGCTGGATCCATGCTGTGCTCACCTCTCAGGACTGCATGGCTTTCGGTGGGAACTTCTTACACAACCTGAACATAGGCATGCAGCTCAGgtgttatgaGATGGAGCGGAGGCTGAAGACTCCAGACCTTTTTAAATTTCCTTATTTCGAGGCCATCTCCTGGTACGTGGCCAAGAACCTGCTAGAGACACTGAAAGAGCTGCGGGAGGAGAAGTGCCAGCCTCAGGAGCATCTGGTGGATGGAGTGAAAGCTTTAATCTCTGCACTGAAGACCTGGCTCAGGAGAGAGTTAACAGGACCCAGCAGTGAGGTTCCAGATAACATCAAGCCCACCCTTCTCATCAAGGAGCTGACCAAGGAAATACGCCACCTAGAGGAGGACTCGAGTCCAGTAAAGACAGTGAAATCTCAGGGAATGTCCTCAGAGTGTTTGTCCACACGCTCCGCTCTGGAGAGACAGTGCCAGGTGCGACGGGCAGCTCGAAGGCTCCGGGAGCACCGCCATCATCACCgccatcgtcatcatcatcatcatcaccatcatcatcgaCACCGCCATCAGCAGCACGCCAAGCCCACCTCCAACCTGGACATCCTGGAGCTGCACACCCGGGAGGTTCTCCGCAGGCTGGAGGTCGGCCCTCTGGAAGAGGGTTCAGACTTCGGCTCCAAGACGAACGGCAAGTTCAGGAGGATCATCATGACGTCTGCTGTAACTGTGAAGAGGAGTCCTGATAACGCCCTGCGGCTGGTGATGTGTAATGGACGGATCATACGagagaggaggcggCTTGCCAGTGTAGCACTGAAGCATGAGCGAGACAAGACCTTGCCATGCCAGCAACACCAGGTCAAAGCAGAAAAAGCATTACCATGCCAACAAGATGGAGTGAAAAAGGAGAGCTCCTTGGAGGTGGAGTTAGAGACACTGTGCACTGTGAAAGCCACCAATCACAAACTCAGGACAGAGCTGCTGAGCTCAGGGTCGAACCTGCAGTCAGATAAAGTTGAGGCAGCCAATGCAGAGAAGCACTCTTCAGATTCAGGAAGCTCAGAGGATGaagagtgtgtgagacagaAGAGGAAAGGCTCAGGGAGCCAAACCAGCCAGTACCACAGATCACTAAAACGGGAACGGCCTACCTCACCCAGCCCGGAGAAGGCCCTGCAGGGCGTGCTGTCTGTGGCAGGCCTGATGTGCCAGCAGATGCCAGAGGAGGGCACAGTTTCTCAGGAGGCCTGGTGGTCCAACCAGACCAGCAGCAATGAGGCTGCCAGTCCGGACAGGGCAACAGGAAGTCCAGGAGAGGAATATTTATACCGGGAAAGCTCACTGTCACCCCCACTCCACCCCACCAAGAGACACGCCCACAACCCCAGCCCCATCAACAACCAGGCCACTAAAGGCAAGCGTCCCAAAAAGGGCATGGCAACAGCCAAGCAGAGGCTGGGGAAGCTCCTGAAGATGAGCAGACACACAAGCCTGCTCGTGTAGCATGACTGGGACCAgagcacacactcatacactgaCAAACACCCACACCACCTTTTCTCtctacctaacacacacacacacaaaacacatacaTGCAGCACTCTAAATGTGCATGTTTAGGTGACAAGGTATGTTTGAATGGCACTAGCATGCTGCTTCACAGCTCATATGGAGCGAATGACACGGAAAATGGAAAACGTCCTCAAAAACAGTGCAGGGAAATTTTAATCACGCATTTTGaaataggaaaaaaacataaaaaacataaataaaaatagcctaAAGTTTCTGGGTGGGTCTCCAAAGCTCAGAGGCTGAGGTATTGGTAATAGCACAGGCTGCTGTACTCTGTTGAGACCTGCAGGACTATGTGCAGTGGTATGGCCAAAGCTGTGTTTTCCAATTCAGCCAATCCTTCAGCTTCAAACCTCCTTTTATACTGAAATTTGTAGATTTGTCACAGTTCGGCTTGGCCAGAGTGTGATCTCCTCCCTCTCCTACCTCCATACTGTTGTGTAGCATAAGTGAAAATGGTGCTTTTTGGGCCGAGGATGGCTTTTTCGTATTTTTTCAAAGCCTGGTTCAGGGCGTATCttctttttttggtcttttttttatctctctgtctctctctctgtctctctctctttctgtccctgTCTCCTCATCGCTGACTACCTTCATCCTCTCTAGCTGTTGTCTGTGGCTGTGAATGATGAGCTTAAAAAGACTTGAGGGCCGGAATTtcctgtatttatgtttttaatggagAATCTTATTCTGATCTCCTTAATTCAGTTCAAAGCGAACTCTAATTCTGGTGGGAAAGCCGGCCTGGAGGTTTCTAAATGGTGCTGAACGTTTTGGAAGCTCTACACCACTATCCTTTCAAACCCTTGGAGCAATAATTGTACagtgttgattggttggtttgtttgttttattgattgattgattgattgattaacagATCTGTTGACAGATCTGTTGGTTATGTTATGTTCACAGGCAGCACCCCCACAGAGCTAGTCCTGTCTGATCCTATAGTTATTGTTATAGTAGTAGGTAGCTAACCATTAAGCACAATTTTTAAGGGGAAGTTCACTGATTTTTATGAATTTCTCTATAATTATGGGTTTTGATCAATTTGATATGAAATACACTGTTTATATAGATGATGATTAtggtaaaatactaaaaaaaatctgaccaaAATTGTTGGTTTCATTGGGGACTATTTTGGTGCGCAATGCCCTGAAACGTTATATGTATCCATCCACTCTTTCATTGATTTGTGATCTATTTTATAACTGTTCTATGCTTAAAATGTTACCAAATCTCTTGTTGGACTGCCGTGGTCACCGAAATGGATCCCCGTTCATGTTTTAATGTACTTTGTGTGATTGTGAGGGCACTGTAAACTACCACAATTCACTCATAATTAATTGTAAACACTATTAGTAAATAATTTGGATTTTGTGTGGGCTAgtaatgagggagtagggatCCAGTTTTATCTTTACTATACTCATTAActtattagtatttttaatttgtttgcaAATGAggaacacctttttttttttttttttaaatcttctcCAAAACTTCTGAAAAGCTCTGGATTTGCCCTTTACCGTAGCACTGGGGTTATCTGCTGCCACCCTGCGGACAGACAGGTAAACTGCAGTGGGTGGTGCTgccttgtatttttttctgctgtgtttAGACTGTAAGGAATTCAGTGAGAGCATAAGAGCTCAGGGAGAAATGACATCATTTCCTGCCtaatttgtgttattattttttccttcaagtgttttaaatgtaaatgttttctgtgttttttttttcttatttgttgGCTGTTAACTTATTAATTTCTAAGAGatgaaaaatgatgaaaatgatTTATGACATTCTGCTATAAGTGCTTCCTGCTATAAGGGTTGCTCttggatttatttgtttttccccgtttgcttgttttttgttgatgtaaataTGTGAAATTTCGAATGCGAGCGGGGACTTTATACGAGCAATGAAATTCACTGATCTTCACAGCGTTTTGTAGACGTCTACTTTCGCTCATTTGAAGCATAAGATTTGATGTACTCAAGGTTTTTGCTAAACTGTGCtgtaactaatgattattttaatttgggACGTCCTCAGTGCCTGTTCTCTGACTATTCCTCATCAAGAACAGCCAAAACTAATGAAAACAATCTGAATACAGGTGAAGCTGCAGGTGTTCTGGTTTGCTtgagtttgagtgtgttttggaTGAAAGATGATAGTGTGTTTCTCAGGGAACAAGCGACGTACCATCTTTAATTTCACCACCAGCATCATTCACACTCTCGTTATGAGCCAGGCTcgttaacttttatttataattctGTAAACGTATCTCCTGTCTgccatgtgtaacaatgtgatTCTGA

Function

symbol description
kdm7a Enables histone demethylase activity; methylated histone binding activity; and transition metal ion binding activity. Involved in histone lysine demethylation. Located in nucleolus and nucleoplasm. Implicated in melanoma.

NR:

description
PREDICTED: lysine-specific demethylase 7A

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K19415 PHF8, JHDM1F; [histone H3]-dimethyl-L-lysine9 demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232716.3 True 4938 mRNA 0.46 18 19569986 19598049
XM_007232717.3 False 4935 mRNA 0.46 18 19569986 19598049

Neighbor

gene id symbol gene type direction distance location
cd36 NA coding upstream 170766 19368514 ~ 19399220 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding upstream 264529 19286835 ~ 19305457 (+)
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding upstream 298139 19268422 ~ 19271847 (+)
LOC111192912 NA coding upstream 391399 19177002 ~ 19178587 (+)
LOC111192965 LOC108435873 coding upstream 550718 18990517 ~ 19019268 (+)
kmt2e kmt2e coding downstream 17561 19615610 ~ 19660520 (+)
orc5 orc5 coding downstream 117739 19715788 ~ 19728171 (+)
golgb1 NA coding downstream 151261 19749310 ~ 19779463 (+)
ppfia2 ppfia2 coding downstream 241146 19839195 ~ 20054048 (+)
lin7a lin7a coding downstream 557006 20155055 ~ 20173304 (+)
G65150 NA non-coding upstream 312403 19253483 ~ 19257583 (+)
LOC111192982 NA non-coding upstream 317537 19250226 ~ 19252449 (+)
G65145 NA non-coding upstream 317571 19247531 ~ 19252415 (+)
G65144 NA non-coding upstream 407068 19162569 ~ 19162918 (+)
G65122 NA non-coding upstream 537235 18945326 ~ 19032751 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding downstream 2839 19600888 ~ 19601638 (+)
G65182 NA non-coding downstream 11416 19609465 ~ 19610521 (+)
G65183 NA non-coding downstream 12863 19610912 ~ 19611872 (+)
G65301 NA non-coding downstream 132428 19730477 ~ 19730879 (+)
G65306 NA non-coding downstream 145835 19743884 ~ 19747191 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 229107 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 290469 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 291915 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 946487 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 1850074 17690209 ~ 17719912 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 182614 19780663 ~ 19794325 (+)
G65565 NA other downstream 1359086 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 1426126 21024175 ~ 21024574 (+)
agbl5 NA other downstream 1842360 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 2031738 21629787 ~ 21715437 (+)

Expression


Co-expression Network