rps16 (rps16,LOC103382554)


Basic Information

Item Value
gene id rps16
gene name rps16,LOC103382554
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20262580 ~ 20266197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232805.3
tgtgttcagtagtGGTAGAGGAAGGCGCTGCCCCTGCTGTAAGGCTGGGAGACCCCGAGGTTCGGCCTTTTTCCGCGCGGCGCTGTGTGAGGAAACATGCCGGCCAAAGGACCCATCCAGTCTGTGCAGGTCTTCGGACGCAAAAAAACAGCCACTGCTGTTGCCCACTGTAAGAGAGGAAATGGACTGATTAAAGTGAACGGCAGACCCCTTGAGATGATTCAGCCAGCTACCCTCCAGTACAAGctgctggagcccatTCTGCTGCTGGGAAAAGAGCGCTTCGCTGGCGTTGACATCAGAATCCGTGTGAAGGGCGGTGGACACGTCGCACAGGTCTATGCTATTCGCCAAGCCATCTCCAAAGCCCTGGTTGCTTACTACCAGAAATTTGTGGATGAGGCTTCCAAGAAGGAGATTAAGGACATCCTGGTTCAGTACGATAGGACCTTATTGGTTGCGGACCCACGTCGCTGCGAGTCCAAGAAGTTCGGTGGACCCGGAGCTCGTGCCCGCTACCAGAAGTCTTACCGTTAAAATATTTGTGCATATTTCGTAcaattaaaaatgagaaaataa

Function

symbol description
rps16 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16).

NR:

description
PREDICTED: 40S ribosomal protein S16

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02960 RP-S16e, RPS16; small subunit ribosomal protein S16e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232805.3 True 579 mRNA 0.52 6 20262580 20266197

Neighbor

gene id symbol gene type direction distance location
lin7a lin7a coding upstream 89276 20155055 ~ 20173304 (+)
ppfia2 ppfia2 coding upstream 208532 19839195 ~ 20054048 (+)
golgb1 NA coding upstream 483117 19749310 ~ 19779463 (+)
orc5 orc5 coding upstream 534409 19715788 ~ 19728171 (+)
kmt2e kmt2e coding upstream 602060 19615610 ~ 19660520 (+)
ppp1r12a ppp1r12a coding downstream 33505 20299702 ~ 20397967 (+)
pawr LOC108434155,LOC108434154 coding downstream 151315 20417512 ~ 20497661 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding downstream 327469 20593666 ~ 20595301 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 1144652 21410849 ~ 21438210 (+)
msgn1 NA coding downstream 1449255 21715452 ~ 21716948 (+)
G65435 NA non-coding upstream 27962 20233986 ~ 20234618 (+)
G65427 NA non-coding upstream 39681 20222100 ~ 20222899 (+)
G65403 NA non-coding upstream 87837 20173370 ~ 20174743 (+)
G65405 NA non-coding upstream 95128 20167147 ~ 20167452 (+)
G65404 NA non-coding upstream 111023 20151233 ~ 20151557 (+)
G65442 NA non-coding downstream 62682 20328879 ~ 20329924 (+)
G65471 NA non-coding downstream 234577 20500774 ~ 20501708 (+)
G65468 NA non-coding downstream 240510 20506707 ~ 20508447 (+)
G65476 NA non-coding downstream 284996 20551193 ~ 20554372 (+)
G65482 NA non-coding downstream 301166 20567363 ~ 20569105 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 468255 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 921701 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 983063 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 984509 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 1639081 18556128 ~ 18623499 (+)
G65565 NA other downstream 690938 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 757978 21024175 ~ 21024574 (+)
agbl5 NA other downstream 1174212 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 1363590 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 2673358 22939555 ~ 22949199 (+)

Expression


Co-expression Network