myf6 (myf6)


Basic Information

Item Value
gene id myf6
gene name myf6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20202098 ~ 20205655 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232806.3
CAAAGTCTTACTAACTCTCAGTCAGCGGGACAGTTCAGAGCCCAGCCAAGCCCAACATGATGGACCTGTTTGAGACCAGCACTTATTTCTTTAATGATCTGCGCTACATAGAGGCGGACCAGAACTCACTGCAGAACCTGGATATAGCAGAAGTGTCTCCACTGTACCAAAGCAGCGAGAGCCCACTGTCTCCTGCCAGAGGCCAAGATCCCATTCCCAGTGAGCCGGGCTGTGATAGCAGCGGAGAAGAGCATGTTCCCGCCCCTCCTGGTCTCCAAGCACACTGTGAAGGCCACTGCCTGATCTGGGCCTGTAAAATCTGCAAAAGAAAGTGCGCCCCTAATGACCGGAGAAAGGCTGCCACGCTACGGGAGCGACGGCGGCTCAAAAAAATTAACGAAGCTTTTGAGGCTCTGAAGAAGAAAACTGTTCCAAATCCCAACCAGCGGCTGCCCAAGGTGGAGATCTTACGCAGTGCTATTAACTACATTGAGAAACTTCAGGACCTGCTGCACAGCCTGGACGAGCAGGACAAACTGTCCGACAGGACCACTTACAGCTACAGTGGCAAAGATCACAATGTTAACAGTGGATATCAGTGGAAGAAATCGTGTCAGAGCTGGCAGGAAAATGTGGATCATTCCAACGACAGTCCATCTCATCCTAGAGAAGAGTGTCCCGTGGAGTCGTCAGCGTCCAGCCTGCGACACCTGTCTTCCATCGTTAACAGCATTTCCACAGAGGACACTAAAGCGCCCTGTCCCGAGGAGAGCGCAGAGAAATGAAGAGCGATAAACCAGAAGAAATCCCACAATTCCACAGTTCTGTCGCATCTCAGTTctgctgttttatattcatatttatgtacatttatttgtgAATTTAAGGCCAGTATACTGTAGAACTGCACGTGATTCCAACTTTCTAACAGTCATAATAATCGACAGAGTGATTCCGGGCAATTCTTTATAATGTGTAcatagattttaatatttattattacttattaacttattttgtatttatgaataaaagagaatggAAACACA

Function

symbol description
myf6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within skeletal muscle tissue development. Predicted to be located in nucleus. Is expressed in several structures, including Rohon-Beard neurons; adaxial cell; fin; muscle precursor cell; and musculature system. Human ortholog(s) of this gene implicated in congenital structural myopathy. Orthologous to human MYF6 (myogenic factor 6).

NR:

description
myogenic factor 6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K18485 MYF6, MRF4; myogenic factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232806.3 True 1049 mRNA 0.47 4 20202098 20205655

Neighbor

gene id symbol gene type direction distance location
myf5 myf5,LOC107734855 coding downstream 12397 20183094 ~ 20189701 (-)
acss3 acss3,LOC107755903,LOC107749070 coding downstream 137308 20053951 ~ 20064790 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding downstream 463679 19732755 ~ 19738419 (-)
lhfpl3 lhfpl3 coding downstream 487655 19665559 ~ 19714443 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding downstream 686715 19409298 ~ 19515383 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding upstream 317200 20522855 ~ 20810711 (-)
nav3 nav3 coding upstream 777497 20983152 ~ 21356508 (-)
LOC103044186 NA coding upstream 1168577 21374232 ~ 21386459 (-)
mrps10 NA coding upstream 1603630 21809285 ~ 21818148 (-)
LOC103040407 NA coding upstream 1618241 21823896 ~ 21877702 (-)
G65416 NA non-coding downstream 9675 20192197 ~ 20192423 (-)
G65409 NA non-coding downstream 27333 20171437 ~ 20174765 (-)
G65408 NA non-coding downstream 34112 20167634 ~ 20167986 (-)
G65407 NA non-coding downstream 38606 20163283 ~ 20163492 (-)
G65375 NA non-coding downstream 288529 19913288 ~ 19913569 (-)
G65437 NA non-coding upstream 29048 20234703 ~ 20235170 (-)
G65439 NA non-coding upstream 30606 20236261 ~ 20236525 (-)
G65444 rps16 non-coding upstream 57002 20262657 ~ 20266198 (-)
G65459 NA non-coding upstream 182367 20388022 ~ 20388675 (-)
G65513 LOC108434154 non-coding upstream 275048 20480703 ~ 20497530 (-)
llph llph other downstream 402496 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 596373 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 831390 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 918066 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 1178440 18898185 ~ 19023658 (-)
ost4 NA other upstream 1339763 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 1424303 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2085030 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 2847618 23053273 ~ 23160179 (-)
G66619 NA other upstream 4302179 24507834 ~ 24508281 (-)

Expression


Co-expression Network