myf5 (myf5,LOC107734855)


Basic Information

Item Value
gene id myf5
gene name myf5,LOC107734855
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20183094 ~ 20189701 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232807.3
AGCAGCCACTACACATCACTCTGAGGCTGCCAGCTGCCAGCTACCACAGCCACGTCTCGTTTCCTCCCATCAGCCCGAGTTTCACCACCTTCACTCACCCACCCATCTTCAGTCCAGACACTTACCAGCCCAAAGCCAAAGCATGGAGATGTTCTGTCCGACCCAAGCCTTCTGCACCTCCTCCCCCGAGGACCTGGACTTCGGGCCCTCAGGAGAACTCACCGGGTCAGAGGAGGACGAGCACATCCGGGCCCCTGACGGCCTCCACCAGCCCGGCCACTGCCTCCAGTGGGCCTGCAAGGCCTGCAAGCGCAAAGCCAGCACTGTGGACCGGCGGAGGGCCGCCACCATGCGGGAGCGGCGCCGGCTCAAGAAGGTCAACCACGCCTTTGAAGCGCTACGAAGATGCACCTCGGCCAACCCCAGCCAGCGGCTGCCCAAGGTGGAGATCCTGAGGAACGCCATCCAGTACATCGAAAGCCTGCAGGATCTGCTGAGGGAACAGGTGGAGGAATACTACAGCCTGCCCACAGAGAGCAGCTCCGAACCTGCAAGCCCATCATCATCCACCTGCTCAGACAGCATGacagactgcaGCAGTCCCGTTTGGTCTCAGATGACATTAACCCCCAGCAGCTCCTACAGCTACAACCTCCAGACTGTTAGCGGAGTGGACAGGGCTGTGGGAGCATCCAGTCTGCAGTGCTTGTCCAGTATTGTGGACAGGCTGTCCTCGGTGGACGCTGGGATTACTGTGGGGAGGAGGAACATGGAGGCTCTGTCACCGGCACACAGCGACTCCCAGTCCAGCACTCCGGACAGTCCCGGCAACCGGCCCATCTATCACATCCTGTGAGGAGGGGGGCACTCCGGACCTCCAGGACACTTGGTCACATGATCCGAACAACCAGCATGCTAATCAAGCTAAATCTCAGCTTCCATGTTATGTACACATTTTCTGTACCGGCTTTTCACCGACAGATCCTTTCTGTGTCATTACCTTTTATGTTCCagtgatattttatattaattaagtaTTCAGACAATAACATGAACTTTGCTCTGTGCTGGTGGTAACTCCTGTACTTcctttttattgtaaatatgatttgtaaatactgtatgtattttaaattgccATTACTGTACGCAGTTAATGCcgttgtattgtatttaaatgCTTTCTTATGTCAAGTATGAGTAGTCAActtattgtatttaataatcaacttaaataatgaataaataaataaatgatttttttttaaa

Function

symbol description
myf5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including muscle organ development; neural crest cell development; and striated muscle cell development. Located in nucleolus and nucleoplasm. Is expressed in several structures, including mesoderm; musculature system; myoblast; pharyngeal arch; and post-vent region. Orthologous to human MYF5 (myogenic factor 5).

NR:

description
PREDICTED: myogenic factor 5

GO: NA

KEGG:

id description
K18484 MYF5; myogenic factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232807.3 True 1269 mRNA 0.52 3 20183094 20189701

Neighbor

gene id symbol gene type direction distance location
acss3 acss3,LOC107755903,LOC107749070 coding downstream 118304 20053951 ~ 20064790 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding downstream 444675 19732755 ~ 19738419 (-)
lhfpl3 lhfpl3 coding downstream 468651 19665559 ~ 19714443 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding downstream 667711 19409298 ~ 19515383 (-)
LOC103035518 nptx1l,LOC108435874 coding downstream 1061634 19111133 ~ 19121460 (-)
myf6 myf6 coding upstream 12397 20202098 ~ 20205655 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding upstream 333154 20522855 ~ 20810711 (-)
nav3 nav3 coding upstream 793451 20983152 ~ 21356508 (-)
LOC103044186 NA coding upstream 1184531 21374232 ~ 21386459 (-)
mrps10 NA coding upstream 1619584 21809285 ~ 21818148 (-)
G65409 NA non-coding downstream 8329 20171437 ~ 20174765 (-)
G65408 NA non-coding downstream 15108 20167634 ~ 20167986 (-)
G65407 NA non-coding downstream 19602 20163283 ~ 20163492 (-)
G65375 NA non-coding downstream 269525 19913288 ~ 19913569 (-)
G65364 NA non-coding downstream 376493 19805520 ~ 19806601 (-)
G65416 NA non-coding upstream 2496 20192197 ~ 20192423 (-)
G65437 NA non-coding upstream 45002 20234703 ~ 20235170 (-)
G65439 NA non-coding upstream 46560 20236261 ~ 20236525 (-)
G65444 rps16 non-coding upstream 72956 20262657 ~ 20266198 (-)
G65459 NA non-coding upstream 198321 20388022 ~ 20388675 (-)
llph llph other downstream 383492 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 577369 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 812386 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 899062 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 1159436 18898185 ~ 19023658 (-)
ost4 NA other upstream 1355717 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 1440257 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2100984 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 2863572 23053273 ~ 23160179 (-)
G66619 NA other upstream 4318133 24507834 ~ 24508281 (-)

Expression


Co-expression Network