alg10 (LOC108427075)


Basic Information

Item Value
gene id alg10
gene name LOC108427075
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11990600 ~ 11997857 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234936.3
AACGTCTGCTCCCGTGCTCAGGTTTCCGTCTGTCAGGTTGTAACCGTCGCTCCGCTCTCCGCTGGCTCGCTGCAGTATGCTGGCGGGTAAAAACATATTTCCCGCTAAAACTGGAGAGTTCATGGGGTTATGACTGAACGGGATTATTGGTAGACAACCCCGGGGAACGAATCTGCAATTTACATTAGGCTGTAGGACGGTTAATAGAGAGAAAAGCGATGTTAGAGCGGGCGGAGTGCTACGCCTTCACGGCGCTGTGCAGCGTCAACTTCTTCATATCGTGTTTAATCTTCTCTTCTGTGAGCCGAGAGCAGAGAGAGCCTTATATGGACGAGATCTTCCACATCCCACAGGCTCAGAAATACTGCCAGGGCAAGTTCAACCAGTGGGATCCCATGATCACTACACTGCCTGGCCTGTATCTGCTGTCTGTGGGAGTGATTAAACCAGTGGTATGGCTGGCAGACTTCTCTGGGGCGGTGGTGTGCTCCACTGCCATGCTGCGCTTTATCAACCTGCTGTTTAACTGTGGGAACCTCTACATCCTCTATCTCATCATCTGCAGGCTACACTTTAAGGACAAGTCCCGCTTGGCTGCTCGGAGAGTTCTCTCAGCCCTGACCCTGTCCACCTTCCCTGTGCTCTACTTCTTCACCTTCCTCTACTACACCGACGCCGGCTCCACCTTCTTCACCCTCTTCGCCTACCTCATGTGTCTCTACGGGTGTCACAAAGCCTCGGCCCTGCTGGGAATCTGCGCCATCCTTTTCCGACAGACCAACATCATCTGGGTTGCGTTCTGCGCCAGCACGGTGGTGGCTCAGAAGATGGACGAGGCGTGGCGGGTGGAGCAGTCAAAGAAGAGGGATGAGAAGACCCCCTCTCAGGTCCCACTGTCTGTCAGTGGCGTGAGGAGGGTAGTgaattttttgttgtattattttacgACACCGGCCAATGTGAAGACGGTGATCTTGGTGGCATGGCCGTATGGCTTAGTCGGTGCTGGTTTCGTTACGTTTGTGGTGCTGAATAATGGAATTGTGGTTGGGGACAGGACTAGTCACGAGGCTTGTCTGAACTTCCCtcagcttttttatttcttctcctTCACGCTGGTCTTCTCGCTTCCCGCCTCACTTTGCTACCACAGGCTGGTCAGGTTCGTACAGTCTCTGAGAAAGCACCCCTTCTTGTTTCTGCTGATGGCAGCTCTGTTCTTGCTGCTGATCTGGAAGTTCACTTACGTCCACAAGTACTTGCTGGCGGATAACAGGCATTTTCCTTTCTATGTCTGGAAGCGGATCTTCCAGAAGCACCATTTGATCCGGTTCCTCCTTGTTCCTGGCTATTTGTTTGCAGCCTGGAACTTTTACGACACTCTAAAGTTCAAGTCGCTGTTTTGGCTCTTAGCACTTTCTGTATGTTTACTGGCAGCTACAGTTCCTCAGAAACTGCTGGAATTCCGCTATTTCATCCTGCCGTATCTCCTCTACAGAGTACACATCCCTCTTCCATCTCTTCCTAGACTGCTGCTCGAATTTGCTCTCTACACAGCAGTCAACGCAGCCACGCTCTACATATTCATCTACAAGACATTTCACTGGCCTGATAGCTCTGCAGTGCAGAGATTCATGTGGTGAAATTTGAACACTGTAATCAGTtcacttcttttttctttttttttttgtactgaagatcaggaaaagaaaaaaaagaaatgactcccttttttttcctttttccccaCGGCTCTCACCAGGTACCAGGTACCTTCCTACTGCAGAATCATGTCAGCAGAAGAACATTCGAAAACCAAAAGCGACATTGAATATGTATTACAGCAGTTTTCTTTTGTTCTCAGTCTTTGTCCTGAAGTACCACATATATTAAACTGTGTTCAAACTGCAGGCAAATGTACTTTActtgattttatttcttaaatcagataaaaataAGTTGAGATTAGTGTTGCTCCGATTTCACTGATGCTCTACTTGTATTGGTACAGTTACTGGCACTGCACACACCATATCATTCTCATCAGTAAAGAGCACTGATACTATGAAGCCGTTactgacacacattttttttataactccGAAAGTTTTCGAATTTGCAGTTACTCAACCATTAAATGCTGTTCTTTCAAAATTGTATATCTTTTTTGAGATATAAAATACTACATGTACCCAAAATAAAACTATGGACTGTAAAatataatgctaaaaaaaaaactctgaagtAATTTAATCAGAGTTTGTATTGATATTGCTACTCAGTACTCAGTATTTACTACCCCCATTGATTGTCCACATGTTAATTGCAGTTGTTCAGATCAGATTTGCCTGTCTGAACATCACAAGTGTATCTGTACGAGTTTGACATCAGTAAGGCAGTGGTCACACACAAGGTAAATGCAGCCCAAATATGATCTTTTATGCCAAATGTGACACAGGTATTTCGTTTGGGTGGCTTGGTACTAAAATCCGGTGCATATCCGACTTTGAAGGCATAAAAATAGGCTACAAGTATAGTGGAAAATGGCTGTGAGTAAACGAGAAAATAATCAGTAATACTAGAATTAGACTCATGTCTCAGCCTTGTGGTGTTCTTAATAATTTGGCTGAACGTGGCTATAGATCATGACTGCAGGGTCCAAAAAAAACTTGTCCATGATAGAAAAATACGTAATTGTATTTAATAAGATTATTTCTCATGTAGTGAGGAACACAAAGGCATCCAGACTAAGACAAATCTTTCAAAACTTACAAATCAGTTTCAAATTACTTCCAAATGTAGCAAAAATGCAGTTTCTGGCTTTTCTGACTATCACAATCAATATAAATACAGTCTAGTTATGCCAAAACTCAGATTTGTGCCAGCAGTCTGAACAAAGCCAACATTTCTCTTTCTACTAAGTCACCTGATGCAGCTAATGAACTAATTAGGTCACCCTTCCTGAAGTGAATGGGCCTGTTAGATCAGGACTAGAGAACCCTCCAGAACTAGAACCGAGAACCACTGGATTATGGGATAATGTGTTCATTAATATCTATGTTTGAAAacacaagttttttttggcACTTACTTAACTACAGTACTGTTCAGAAAACAGCTGTTGCAGTTGTTAAAATTGTTCTGTTTGTGTTAAAATGCTGATCTCAGCAATAAATTTGTTTACACCtctaaaaatactgtatagcAGTATACATCTGCACTGGTTGGCTATTGAATTGTTGGCTGCCTTGATCCAGCTAATCACTATGGGCTGGTTTCCTAAACAGATTCAAAGTGCTGTATAGTCCAGGACTAGGTTTAATCATTAGCAATCACAGAAAACCAGCCCTATATTAAtttccaccagcagctcatttgaTTTACTTAAAGTAAGGACTGTTTAATTGATAACTAGGTGTTTGATGAGGACAGGGAATACTGAGCTTCTTCTAGTTCTCTTAATGTTTTAAGAAGCAGATAAGAAAAGGggtggatggatttttttgtctttaatattaaatgttctACACAGTTGAATTGTGTTGTCTTTTTCAAATGATTCCTTAAGTGTCCTCGTCTTTATTCACTGCCATTTGAGTCGCCTGTCGTGGACCAAGCACAAGCATcatctttttaatgtgattcgacaagttgtttgttttttcttcaagTTATACTGGTTCTGCCTTGTTTACCCTTAAGATGAATCGCCATAAATACTGATGCCAtttcttttaaactttaaacccTGTTAGATACAGATAAAACACGTCAGTCAGTTTAGTCTTAATTTCTTTACCTGAATGTTTTTCCTTTCACTCATATGAGTTCTCTTTGTATTTGTGAAGGTCCTTGTTCTCCATTGTCAGTGTTCATTTGCAAACCCACTGTTCTGATGCAATAAAGAAAGAATTTTAAATTTA

Function

NR:

description
putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase

GO: NA

KEGG:

id description
K03850 ALG10; alpha-1,2-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234936.3 True 3923 mRNA 0.42 3 11990600 11997857

Neighbor

gene id symbol gene type direction distance location
LOC103028484 srr,LOC108427077,LOC108279919,LOC106575990 coding upstream 3816 11980371 ~ 11986784 (+)
brd1 brd1 coding upstream 1525882 10440014 ~ 10464718 (+)
alg12 alg12 coding upstream 1569791 10409021 ~ 10420809 (+)
pim3 pim3 coding upstream 1674179 10310441 ~ 10316421 (+)
il17rel NA coding upstream 1919718 10042203 ~ 10070882 (+)
c7h12orf40 NA coding downstream 363327 12361184 ~ 12373369 (+)
LOC103032294 NA coding downstream 513031 12510888 ~ 12556587 (+)
LOC103032798 NA coding downstream 560803 12558660 ~ 12595497 (+)
LOC103033113 LOC108427023 coding downstream 606253 12604110 ~ 12626928 (+)
LOC103023853 NA coding downstream 635422 12633279 ~ 12650099 (+)
G63328 NA non-coding upstream 204 11986998 ~ 11990396 (+)
G63303 NA non-coding upstream 15047 11956885 ~ 11975553 (+)
G63285 NA non-coding upstream 179010 11811156 ~ 11811590 (+)
G63269 NA non-coding upstream 272058 11718022 ~ 11718542 (+)
G63268 NA non-coding upstream 288894 11701418 ~ 11701706 (+)
G63329 NA non-coding downstream 9428 12007285 ~ 12007519 (+)
G63410 NA non-coding downstream 379289 12377146 ~ 12378927 (+)
LOC111192954 NA non-coding downstream 691462 12689319 ~ 12696748 (+)
G63460 NA non-coding downstream 701191 12699048 ~ 12746828 (+)
G63465 NA non-coding downstream 810010 12807867 ~ 12811899 (+)
G63051 NA other upstream 2340513 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 2550036 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 3450477 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 3575561 8401840 ~ 8415039 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 5134838 6851230 ~ 6855762 (+)
G63432 NA other downstream 470193 12468050 ~ 12468902 (+)
LOC111192955 NA other downstream 1158369 13156226 ~ 13161367 (+)
gata3 gata3,LOC107555822 other downstream 2169372 14167229 ~ 14242234 (+)
G64015 NA other downstream 2746878 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 4397469 16395326 ~ 16426623 (+)

Expression


Co-expression Network