LOC103029428 (abcd2,LOC108427069,LOC107689723,LOC107566844,LOC107689245,LOC106575983)


Basic Information

Item Value
gene id LOC103029428
gene name abcd2,LOC108427069,LOC107689723,LOC107566844,LOC107689245,LOC106575983
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12330033 ~ 12359741 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234940.3
TGGCTTTTGAGAAGCAGCAGTAAAACAGAGTGATGACGGACAGATCTGATGCTAgcggtgctgctgctgccggtAGATTGCAGTGCAGATATGGCCTCCTCGCGGACAGATTTGTGATGTAGGAGCCTGAGTGATGGACGCGGAATAGCGACAGACCGGCTGCAAATTAACGACAAAAAACAGCGCAAAAATGACGAACCTCCTGCACGCGGCGTCCAGAGTGCGGTGGGATAAGCGCACGGCGGCGCGGCGGGCCGTGCTGGTGGTCGCTGCGGCGTACGGAGCTAAGAGCCTGTACCCGCTCATCCTCAAGCACGTCGGGCGGAGAACCGGCAAGCCAGAGGCCAACGGGGTGGGGGGCTCGCACCGCCTGCAGCCCGCAGCGCCCGGCGTGAACGCGGAGTTCATGCGGCAGATCCTCGCGCTGGTGAAGATCGTGTTCCCCAAGCTGCTGACCCGCGAGCTCGCGCTGCTCTGCCTGCACTCGTCGGCGCTGGTCTCGCGCACCTTCCTGTCCATCTACGTGGCCGGCCTGGACGGGCAGATCGTGAAGACAATCGTGGAGAAGGAGCCGCGCAGCTTCGCCGCCAAGCTGATCAAATGGCTGCTGGTGGCCATCCCCGCCACCTTCGTCAACAGCGCGATCCGCTACCTGGAGGGCAAGCTGGCCCTGGCCTTCCGCACGCGCCTCGTCGAGCACGCGTACCGGACCTACTTCACCGAGCAGACCTACTACAAAGTCAGCAACATGGACGGCCGGCTGGCCAACCCGGACCAGTCCCTCACCGAGGACGTGATGATGTTCTCCCAGTCCGTGGCCCACCTGTACTCCAACCTCACCAAGCCCATCCTGGACGTCATCCTCACCTCCTACACCCTTATCCAGACCGCGCGCTCCCGGGGGGCCAACGCCACGGGCCCCACGCTGCTGGCCGGGCTCGTGGTCTTCGTCACGGCCAAGGTGCTGCGCGCGTGCTCCCCCAGGTTTGGGAAGCTCGTGGCTGAGGAGGCGCACAGAAAGGGCTACCTGCGGTACGTGCACTCCAGGATCATCACCAACGCAGAGGAGATAGCCTTCTACAGGGGCCACAAGGTGGAGATGAGGCAGCTGCAGAAATGCTACAAGGCCCTGGCTGAGCAGATGAACCTCATCCTGTCCAAAAGGCTGTGGTACATCATGGTTGAACAGTTCCTCATGAAGTATGTGTGGAGTGGTTGTGGCCTTGTCATGGTCGCTGTGCCCATCATCACTGCTACAGGCTTTGCTGACAATGAACTCGCTGATGGTCAGACTCAAGTGTTAGTGAGCGAGAGGACAGAGGCCTTTACCACTGCCCGCAACCTCCTGGCCTCCGGAGCCGACGCCATCGAGAGAATCATGTCTTCATATAAAGAGGTCACAGAACTGGCCGGATACACAGCCCGAGTCCACAACATGTTCCTGGTGTTTGATGAGGTGCAGAGGGGCGTGTACAAACGTGCATCCGTATCCACGACAGCAGCGGACGGGGAGAAGAAGAGCGGGGGGCGACACGAGCTGCACATTGACGGGCCTCTGGAGATCAAAGGGAAAGTCATTGATGTGGATAAGGGTATAGTCTGTGAGAATGTGCCCATCATCACTCCAAATGGGGATGTGGTTGTGTCCAGCCTGAACTTTAAGGTAGAGGAGGGCATGCACCTTCTCATCACAGGACCGAACGGCTGTGGGAAAAGCTCTTTGTTCCGTATCCTCAGCGGCCTGTGGCCTGTCTACGGTGGCCTGCTCTACAAACCCGCCCCACAGCACATGTTCTACATCCCACAAAggccTTACATGTCTGTGGGGACGCTGCGGGACCAGGTGATCTATCCCGACTCATTAGAGGACATGCATGAGAAAGGCTTCAGAGACAAGGATCTGGAAAGCATCTTGGACATCGTCAACCTGAACCACATCGTGTCCCGAGAAGGAGGCTGGGAGGCAGAGGTGGACTGGAAGGACGTTCTATCTGGAGGAGAGAAGCAGCGGATGGGAATGGCTCGCATGTTCTACCAGAGGCCGAAGTACGCCCTGCTGGATGAGTGCACGAGTGCCGTCAGTATTGATGTGGAGGGAAAAATCTTCCAGGCTGCGAAAGATGCTGGAATCTCTCTGCTGTCTATTACCCATAGACCCTCTCTGTGGAAGTACCACACCCACCTCCTGCAGTTTGATGGAGAGGGGGGATGGCGGTTTGAGCAGCTGGACACGGCCACTCGTCTCTCTCTGACCGAGGAGAAACAGCGCCTGGAGTCTCAGCTGGCTGGAATTCCCAAGATGCAGCTGCGTCTGAACGAGCTGTGCAAGATCCTGGGAGAGGATTCTGTTCTAAAAACAGAGGAACCCGAGGAGGAGGAGTGAGCGACTGAGCCGCAGTGTTACCCTCAGAACCCAGTACGCACATCCTCCTGTGCTACTGCAGTGTTAAACATACGTTTTAAACTCACGTcactttaatattgttttttcttttatctgttttatctgGTCATCATAGTTCCATTTTTGTAATCCTGAGTATTTTGGTACTTTAACAAACCACTGCTTCAGAACATTTTAGTGACGTTTATGGTTTTACTGCTGTATGTCTTATTTGGTGACAGTAACAGCTGTTATTGTTACTTTTTAGATATATTTCTAGttagaaaatattgatttcttactGGACACTACAGATTTTAGGTGATATTAACTATGATATTTTTACAGAAATACTTAAAACCTAACCACTAAACCAATCCTTAAATCTGATagtttaatttgtgtttaatataatatactgtctCTTTTTCCCCTAATTTGTGAAATTGGGCCTCATTCACCaacattttcttaaaatgtgcttttaaccctttaacagtcACACAAAGACATATGTTTAAAGAAAATGGTACAAATTATGTTTCTGAACCTTTGTTCCACCTAGTAACCAGCTGGATGACTTGCCCAGTTACAGAAAATGAATACAGGAGTACAATAAAATTAGAatacactgtctggccaaaaacaaaagtcaccacctggatttaagtaaatgatgtggggttaaagctgcagttggtctgcaggtctgggttcagcaacagtatgt

Function

symbol description
abcd2 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to act upstream of or within fatty acid beta-oxidation; transmembrane transport; and very long-chain fatty acid metabolic process. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane.

NR:

description
PREDICTED: ATP-binding cassette sub-family D member 2-like

GO: NA

KEGG:

id description
K05676 ABCD2, ALDL1; ATP-binding cassette, subfamily D (ALD), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234940.3 True 3113 mRNA 0.53 10 12330033 12359741

Neighbor

gene id symbol gene type direction distance location
LOC103029962 LOC108427070,LOC108279892 coding downstream 9708 12255305 ~ 12320325 (-)
LOC103023221 cpne8,LOC108427072,LOC108279828,LOC104935575 coding downstream 83474 12029314 ~ 12246559 (-)
tprkb tprkb coding downstream 339528 11986914 ~ 11990505 (-)
trmu trmu,LOC102792203 coding downstream 351274 11970797 ~ 11978759 (-)
LOC103026753 LOC108427079 coding downstream 364226 11824846 ~ 11965807 (-)
LOC103033667 NA coding upstream 324485 12684226 ~ 12689035 (-)
LOC103024791 parp11,LOC108280019,LOC107726831,LOC107597042,LOC107689238,LOC105020367,LOC102790985,LOC107748476 coding upstream 331849 12691590 ~ 12699482 (-)
LOC103034510 tnni1d,LOC108280151,LOC108427054,LOC107597014,LOC103374597 coding upstream 889911 13249652 ~ 13260256 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding upstream 1036744 13396485 ~ 13422065 (-)
depdc4 LOC108427048 coding upstream 1063897 13423638 ~ 13432932 (-)
G63384 NA non-coding downstream 346473 11983296 ~ 11983560 (-)
G63320 NA non-coding downstream 506956 11817096 ~ 11823077 (-)
G63265 NA non-coding downstream 694518 11630642 ~ 11635515 (-)
G63259 NA non-coding downstream 1671609 10658204 ~ 10658424 (-)
G63255 NA non-coding downstream 1699573 10630129 ~ 10630460 (-)
G63538 LOC108427067 non-coding upstream 168148 12527889 ~ 12529641 (-)
G63540 NA non-coding upstream 175224 12534965 ~ 12538377 (-)
G63552 NA non-coding upstream 223036 12582777 ~ 12587477 (-)
G63607 NA non-coding upstream 440724 12800465 ~ 12803555 (-)
G63617 NA non-coding upstream 492533 12852274 ~ 12854361 (-)
G63217 NA other downstream 1918802 10314799 ~ 10411231 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 2707245 9618661 ~ 9622788 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 4156217 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 4710601 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 5470363 6787342 ~ 6859670 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 5727 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 446230 12805971 ~ 13027498 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 1481452 13841193 ~ 13887868 (-)
G64034 NA other upstream 2425580 14785321 ~ 14786149 (-)
LOC111192906 NA other upstream 2630488 14990229 ~ 14992730 (-)

Expression


Co-expression Network