st8sia1 (st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490)


Basic Information

Item Value
gene id st8sia1
gene name st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13271177 ~ 13303112 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234959.3
GGCTGTAGGTTATTTAGCACAGTTAGGCGGTGGATGCTGCCTGCCGGCCGGGGCTGAGGCTGGGTCGGGTGTGTAGCTAGCTAGCGGACCCCCGCGTGGAGAGGGGGCTGCTGGGGCTCTATAGTCAGCAGCACGCAGCAGAGGCGCGGAGgaacagaaacactggatactaCTGCCTAGATTCACTGGACTAGACCCCCTGGACCTCCGGTCTCGCTAGCTTGTGCTGACTGCAGGGTCCTCCTGCAGGAAGAGGGCTCCTGCGTGcatcatatatataaatataaatacatgcccaatggtggaggaggagaggaaccTACTGAATGAGCAGGAGCTGCAGTCCAGTGCAGGAGAGACGTGACTACTACACAAGGCTGGCACCATGATGATGTCTCTGAAATGCCACAGAAGCAAGTCTGTGTGGGCCGCACTGGGAGTGCTGGTGCTCTGCTGGCTCTACATCTTCCCAGCCTACAGGATGCCCAGTGATAAGGAGATAGTGGAGGAGGTGCTGAGGCAGGGCCAGACCTGGAGCAAAAACCAGACTGGCATTGATCTGTACAGgAAGTTGCTCACAGAATGCTGTGACCCAAAGAAGATGTTTGCAGTCACCAAAGAAAACTCACCCATCGGCAAGACCCTGTGGTATGACGGCGAGTTCTACCACTACCACACGGTCAGCAATGAGACCTATCCGTTCTTCGTACAGGATACTCCGCTGCAGCTGCCACTGAAGAAGTGCTCGGTGGTGGGGAACGGTGGCGTTCTGAAGAACAGCGGCTGTGGCAAAGACATTGACCAGGCTGACTTCGTCATGAGATGTAACCTGCCTCCACTGTCCAAAAAGTACACTGATGATGTGGGAACGAGGACACAGCTGGTGACGGCCAATCCCAGTATAATAGAGAAGAGCTTTCAGAATCTCCTGTGGTCTCGGAAAGCCTTCGTGGAGAGCATGAAGGCCTACGGCTCCAGCTACATCTACATGCCTGCCTTCTCCATGAAGCCGGGGACGGAACCCTCGCTCAGGGCCTACCACACGCTGGCAGACACCGCCTCCAACCAGACGGTGCTGTTCGCCAACCCGGACTTCCTGAAGAACGTGGGACGCTTCTGGAAGAGCCGCGGCGTGCACGGCAAGCGCCTGTCCACAGGGCTGTTCCTGGTGAGCCTGGCACTCGGCCTGTGCGAGGAGGTCACGGCCTACGGATTCTGGCCCTTCTCTGTGGGGCTGGACGAGCGGCCGGTCAGCCACCACTACTACGACAACATCCTGCCGTCGTCGGGGTTCCACGCCATGCCCGAGGAGTTCCTGCAGCTGTGGCACCTCCACAAGAGTGGCACGCTGCGCCTGCGCGTCGGCAGCTGCGTGCCAGGCAAGGACCAGCAGAAgtaggaggagaaggaggaggaggtggatgaAGAGGAGCAATGGTTGCTATGGGCAACTGCTTTGGATTGTCTTGTGTTTTGTGTTAGAGGCTCCACCCCCCCCCACGAACCACGACCACCACCAACAACACCACCCTCACCTATTCTTCGGATTAGCATGAGAATAAAGAGTGAGAATAAAGCCTCTTGGAGCTGATGCCAGCCCTCTGCTTGATCACAATAGGGGAAAACGGATGATGAGGACTCAATACCTCATCctaacacactcacatacacacacacacacacacacacatacacacacacacactcagatagCTAGACACATTTCCCTTTGCTGTTGCCAAGAAACTGTCATTCAGGCCTGCCTGGACGTTCAGTCCACACTCGGTCGCCACCACCGCACAGCATTCAAGCTGGAGGTATGGTAGGGGGTCTTTGGAATGCGGGGGCTGGCTAAGAGCTGCCCGCTTGCTGTTTAAAAGCTATAGCTGCATTTTGCTTcgggtttttttttacagcagctgGGCTCCCGGACCCCCGGGggctttttcttttgttgttcaaAAGCCTGAACAAGAGGACGGGGCGTGCGGGGGCGGGTACTTAAAGACGTCTCAGATGGACTCAGTATGAGGAGCAGAAGCGAGGAAAGCAGGCTTCATGCCAAGGCAACAAGAGtcgggggcgggggggggggggggtcagggCTAAAAATGGAccagagaaaaaaggagaaacaaACTAGAAACACTGCAGTGTGTAAACCTGTACACGgttctgctttcttttttcatgatgacttactttaaaataagaaaaaaggaagaaaccaTAATCTTGAAGAGGAGAAGACTGACTTGAATATGTGTCGATGTGTCGATTACAGTGGAATTCCAtcaatttatttcaaaatttctaaataattttgTCGCTAAGATGTAAAATGATGCAATAATTGTAGACACTTGCTAACTTTTACTTAATTCTTTACAGTGGTGCTAATGGTAAGATATGgcaatttcatttaatttccaatttaatttaaaccaaCAGTGAACCTTTTATGTCTTCAGAGTTGTTTATATCAGAGAGTGTCTCTAATGATTTGGAGGCTATTTGGTCTTTGAGATAAGTGTGCGAGGTCTCCTACATCAAGACTCTCTTACCACTTCGCATGGACAtctctagccagacaccaccagtcacgatcattaccaaaCACTGCTCTACTGTTCactaaagtaactttttttgaGGGAGATTTTAAAGCATATGAGCATTATCCCATTACAGGTGGGTTGCTCTGGTTTGAATCAGTTAATGAGATAAGTAAGCTTAGAATTTCCTcctgttttggtttgttttcacacagagaAAAAGCCAATCGCaacaaaatgcatcacaacaaaCCACCTGAGATCATTCTCTCTGCTAATTAGTCAGACCTGCGAGCAGTAAACATTTACATGTACATTAacagcatttagctgacacttttatccaaagtgacttacaaggtaATTCCTATTACAGCAGTGGACCAATGCAGTGTTAGAAATCTTGCCCAAGGACGCTTATTGGTTTAGCGCAGCATATCTGTTACCTAGACGAGgcattgaaccccagtctcccacatgatgtgttAGCTCACCTCCTCTCAAAGATCAATTTGGTGTTTTGCTTCACACCTAAATGCATATCGTCGGATTAGAGCttagatgttaattaacattgcaacaatGAAGaagcatatacctataattTAAGAGCAATGTtaattaagaacagctacacacagcgctgcaagtcaaatgCTTAGTGGAtgagctgcgtgattataacattctaagtGCAACTTTTATTCAAATAACAGTTTGTTTTGTTGCTTAGCTATATTGtatcacgccatagctttatataaaataaaaatagcattaaaaaacagacacctacatcacagactattttcttgggcagagaatctaagctctaaaccGGATTAAAAAGTGCAAATGGGAAAATTCTTAATCTACTCACAACCATCATCAATATAAACAACTGTACACCCgagcatttcacaccaaaccagtTAGAATGACATTGTTCACATCTTAACTATTTAATTCTGTAGAATTTTTCAGAAATTTGCTAAATTGATGGAATTCCCCTATAAAACAGAACCAAAATGGAAACGCAGACATTTGACATGAAGTGAAATGAATGTACTGTAAATGCAATGCTGTTTGAACCGCGATTTCGAACATTCTTTCATCACACGTCATTAATTTTTAGATATCAGTATAGTAGGTACCTATATTGcgtatttgttttttgtgaacTGCTCCAGAGAGCACTTCTTCTATTcatgttggtgttttttttattagaatttgatcattttttttattttatttatatt

Function

symbol description
st8sia1 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including corpuscles of Stannius; forebrain neural plate; kidney; nervous system; and unfertilized egg. Orthologous to human ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1).

NR:

description
PREDICTED: alpha-N-acetylneuraminide alpha-2,8-sialyltransferase

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity molecular_function

KEGG:

id description
K03371 SIAT8A; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8A)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234959.3 True 3817 mRNA 0.47 5 13271177 13303112

Neighbor

gene id symbol gene type direction distance location
LOC103034836 NA coding upstream 28435 13210222 ~ 13242742 (+)
LOC103034184 LOC108427058,LOC108279609,LOC107689715,LOC107584717,LOC107748475,LOC107597007,LOC100708075,LOC102305399,LOC102790409 coding upstream 467606 12767838 ~ 12803571 (+)
LOC103025111 LOC108427059 coding upstream 527566 12701140 ~ 12743611 (+)
pyroxd1 pyroxd1,LOC107584714,LOC107597005 coding upstream 590150 12667180 ~ 12681027 (+)
trnag-gcc_1 NA coding upstream 611659 12659448 ~ 12659518 (+)
LOC103036201 NA coding downstream 66568 13369680 ~ 13381915 (+)
LOC103026035 NA coding downstream 83426 13386538 ~ 13396263 (+)
usp44 usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009 coding downstream 130457 13433569 ~ 13445672 (+)
fgd6 NA coding downstream 204266 13507378 ~ 13539050 (+)
LOC103030426 nr2c1,LOC107689225,LOC107755159 coding downstream 241840 13544952 ~ 13557590 (+)
G63493 NA non-coding upstream 72342 13173393 ~ 13198835 (+)
G63490 NA non-coding upstream 77409 13170802 ~ 13193768 (+)
LOC111192873 NA non-coding upstream 98750 13171696 ~ 13172427 (+)
G63488 NA non-coding upstream 108079 13158325 ~ 13163098 (+)
G63465 NA non-coding upstream 459278 12807867 ~ 12811899 (+)
G63514 NA non-coding downstream 22188 13325300 ~ 13325508 (+)
G63709 NA non-coding downstream 94520 13397632 ~ 13401310 (+)
G63738 NA non-coding downstream 148634 13451746 ~ 13509597 (+)
G63743 NA non-coding downstream 169322 13472434 ~ 13475420 (+)
G63749 vezt,LOC107567659,LOC107667718 non-coding downstream 183287 13486399 ~ 13487618 (+)
LOC111192955 NA other upstream 109810 13156226 ~ 13161367 (+)
G63432 NA other upstream 802275 12468050 ~ 12468902 (+)
G63051 NA other upstream 3621090 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 3830613 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 4731054 8526218 ~ 8540123 (+)
gata3 gata3,LOC107555822 other downstream 864117 14167229 ~ 14242234 (+)
G64015 NA other downstream 1441623 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 3092214 16395326 ~ 16426623 (+)
G64289 NA other downstream 3136108 16439220 ~ 16442449 (+)
G64431 NA other downstream 3449931 16753043 ~ 16753560 (+)

Expression


Co-expression Network