usp44 (usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009)


Basic Information

Item Value
gene id usp44
gene name usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13433569 ~ 13445672 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234964.3
AACGTAATGTCGCACTGAGGGAACACCACGCGACAACTGTAGACAAGATGGCGACTGCGGTCTGTGCCCGATGTGTATGTTAAGTTAAGACACCGCTGGTAGAGAAACAGGTAAGCCATGCCCTGGGAGAAGGTAGTTGTACCACTGGCTGCCTTCACCATGATGATGTGAAGTGGGCATGACTGACTGTGATGGACAGGTGTAAGCACGTAGGTCGCTTGAGGCTTGCGCGGGACCACTCCATCCTGAACCCGCAGAAATGGCACTGCGTGGACTGCAACACCACCGAGTCTGTCTGGGGGTGCCTCAGCTGTTCGCACGTGGCCTGCGGACGCTACATAGAGGAGCATGCACTTCAGCACTTCCAGGAGCAGCACCACCCTTTGGCCCTGGAGGTGAACGAGCTGTACGTTTTCTGCTACCTGTGTGACGACTATGTGCTGAACGACAACAACACAGGTGATCTGAAGCTGCTGCGCAGTACGCTTAGCGCCATCAAGAGCCAGCGCTATGAGGTCACCACACGGAGCGGACGCACCCTGCGCTCTGCCGCAGCCCCGCCTGAGCAGCCAGGTCCTGGCAACACGCGAGAGCTGCAGCTGCGGGACGAGGACCGCATGTTTACAGCACTGTGGCACCGGCGCCGGGCCCTGATGGGCCGCATCTTCCGCGTCTGGTTCGAGCAGACAGACCTCGGGAAGAAGCGCCTGGAGGAGGCGCGGcagcaggaggaagaggaggagaggaagcgTGAGGCTCGAGAAATGAGACTTAAACTAAAGCGGCAGCTGAGGGAGGAGCTTGAGAGCGCTCCACCCCGGAAAAGCCACCGTATCCGGAGGCAGAGCCAGAAAGTGTCCACTGTCGTTACTGGACCAGCCAAGCCAGTTAAATCTGTCAAACACAAGCCAGCTCCTCCCCCTGCTGTAAGGACTCCTAAGAGAAAAACGCCTCAAAGGAGGCCACCGCCCCAAACCAAGGCCAAACAGACTCGAGCTCCGCCCTCAAAATCGACGGGGGACTCGCCTATCAAACGGCGGCCCACCGTCACGCCAGGTGTGACTGGCCTGCGCAATCTTGGCAACACGTGCTACATGAACTCGATACTACAGGTTTTGAGTCACCTGCATGTTTTTAGGGAATGTTTTTTGAGACTGGATTTGAACCAGGCCCTGGAGTTGCTGGCCTCCGCCGTCAGCCGCAAGCTGGGGCTCTCGGCTCAGCACAGCACTCAGCCCAAAGCTTCTGGACCAGGCTCAGGGCTCAGCGGCGGGGCATCTCGCTCACGGAGCATGGAGCTCATCCAGCCCAAAGAGCCCAGCTCCAAACACATCTCACTCTGTCATGAGTTACACACTTTGTTCCAGGTAATGTGGTCAGGGAAATGGGCCCTGGTGTCTCCCTTCGCAATGCTTCACTCAGTATGGCAGCTGATCCCGGCGTTCCGAGGCTACGCACAACAAGATGCGCAGGAGTTCCTGTGTGAACTCCTGGATAAGGTCCAACATGAGCTAGAGCGAACTGGAACGCTAACACCCGCCACTgtgccagccaatcagagacggCTCATCAAACAGGTGCTCAGCGTGGTCAACACCATCTTTCATGGCCAGCTTTTGAGTCAGgTGAGGTGTTTGTCTTGTGATCACCGCTCTAACACAGTGGAGCCGTTCTGGGATTTGTCGTTAGAGTTCCCCGAGCGCTATCACAGCAACAGCAAGGATGCTGCTCAGGTTCCATGTGGGCTGACGGAGATGCTGGCCAAGTTTACAGAGACTGAGGCTTTAGAGGGAGCCATTTATGCTTGTGATCACTGCAACAATAAGCGCCGGCGGTTCTGCTCCAAGCAAGTTGTTCTAACAGAAGCTCAGAAGCAGCTAATGGTCTACAAACTGCCTCACGTTCTACGACTGCACCTCAAACGCTTTAGatggtCTGGTCGTAACCACAGGGAGAAGATTGGTGTTCATGTTAAGTTTGAGCAGGAGCTGAACATGGAGCCATACTGCTGCAAAGACTCCAACACATCGCCACGGCCCCAACACTTCCTCTACCAGCTCTCTGCTGTTGTGATGCACCATGGGAAGGGCTTTGGGTCAGGCcattacacagctttctgctaTAACACAGAAGGAGgATTTTGGGTGCACTGTAATGACTCgaagctgagtgtgtgtgcggtGGAGGAGGTGTGTAAGGCGCAGGCCTACATTCTCTTCTACACCCAGAGAAGCTCTCAGGACAAAGGCAAGGCCAGCGACCTCTGACCCCTACTCCGCAGCCAGTCAGCCACAGAGacattgtattgtatattcTGTTGATACGATGGTGATGTTAAGAAAGTTAGTCTgcacgcgtgtgtgtgtatgcgtatgCAGGCGTTTCTGTATctgtagtagcagcagcagcagcagcagcattcagccgttgtggaaatgctcttaatgCCTTACACAGATCTTTGGCAGTTGGCACTCTTGCAGTGATTgtagctgtgtgtatgtgtgtgtgtgtgtggtgtacgtgcgtgcgtgtgtgtatataagagaGTTAAGTAAGAGTCAAGATGTCAGTTCTAGCATTATTGCAGCTTGTTTTTGAGTCTGAGAGggtcttttaattttgttttaattgtaaaCTTTAacgcagtttttttttttgctgaatacTGCCCACAAACCAAAGTGTAGAAAAACACAACTTTTGAATGTCGACTGTTTTATCTGATTTGCTTCAGCCCTCTTTACAAAGGGACAAAGTTGCAAAAGGCATCACTGTGATGTCAGTAtcacagaagtgtgtgtgtttgattgtgtgtgtgtgtgtgtgttgtttgattgtgtgaaactgacaatATTCCCCTCCCAGTCCCCTTATAAAGTGCCCTGCCATGTTTGTTGACCAGTTCTTTAAGTCTGTTCTAGTGTTATCAGCTCCTTTCGAGTATTTGGAGCATGACTAAATGATTCAggattgttttcttttttatgtttagacTTTCCAGAATGTACTTTTATATACTCAGTTCTTGGGtaaacaa

Function

symbol description
usp44 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human USP44 (ubiquitin specific peptidase 44).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 44

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0016579 protein deubiquitination biological_process
GO:0051322 anaphase biological_process
GO:0090231 regulation of spindle checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11834 USP44_49; ubiquitin carboxyl-terminal hydrolase 44/49

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234964.3 True 3040 mRNA 0.52 8 13433569 13445672

Neighbor

gene id symbol gene type direction distance location
LOC103026035 NA coding upstream 37306 13386538 ~ 13396263 (+)
LOC103036201 NA coding upstream 51654 13369680 ~ 13381915 (+)
st8sia1 st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490 coding upstream 130457 13271177 ~ 13303112 (+)
LOC103034836 NA coding upstream 190827 13210222 ~ 13242742 (+)
LOC103034184 LOC108427058,LOC108279609,LOC107689715,LOC107584717,LOC107748475,LOC107597007,LOC100708075,LOC102305399,LOC102790409 coding upstream 629998 12767838 ~ 12803571 (+)
fgd6 NA coding downstream 61706 13507378 ~ 13539050 (+)
LOC103030426 nr2c1,LOC107689225,LOC107755159 coding downstream 99280 13544952 ~ 13557590 (+)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding downstream 115764 13561436 ~ 13565100 (+)
tmcc3 tmcc3 coding downstream 145940 13591612 ~ 13633235 (+)
rbm17 rbm17,LOC107748463,LOC107755150,LOC107663450 coding downstream 312656 13758328 ~ 13773588 (+)
G63709 NA non-coding upstream 32259 13397632 ~ 13401310 (+)
G63514 NA non-coding upstream 108061 13325300 ~ 13325508 (+)
G63510 NA non-coding upstream 122398 13257901 ~ 13311171 (+)
G63493 NA non-coding upstream 234734 13173393 ~ 13198835 (+)
G63490 NA non-coding upstream 239801 13170802 ~ 13193768 (+)
G63738 NA non-coding downstream 6074 13451746 ~ 13509597 (+)
G63743 NA non-coding downstream 26762 13472434 ~ 13475420 (+)
G63749 vezt,LOC107567659,LOC107667718 non-coding downstream 40727 13486399 ~ 13487618 (+)
G63756 NA non-coding downstream 95489 13541161 ~ 13542001 (+)
G63755 NA non-coding downstream 96941 13542613 ~ 13543511 (+)
LOC111192955 NA other upstream 272202 13156226 ~ 13161367 (+)
G63432 NA other upstream 964667 12468050 ~ 12468902 (+)
G63051 NA other upstream 3783482 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 3993005 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 4893446 8526218 ~ 8540123 (+)
gata3 gata3,LOC107555822 other downstream 721557 14167229 ~ 14242234 (+)
G64015 NA other downstream 1299063 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 2949654 16395326 ~ 16426623 (+)
G64289 NA other downstream 2993548 16439220 ~ 16442449 (+)
G64431 NA other downstream 3307371 16753043 ~ 16753560 (+)

Expression


Co-expression Network