fgd6


Basic Information

Item Value
gene id fgd6
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13507378 ~ 13539050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234965.3
ATCGTGGATGCGAAGCCCCAAGTGGTGAGACCGAGAATGAGCCgttggagagagaaagactgaatGAAAGCGGAGTGTCggatttgttttctctttttatcacttgttagttagctaaatcAACAACGCGGAGATGGGTTTTTATGTAGGTAAAGggctttttcctgttttttggaCTTAACGTTACTATGGAATATCCCGGAGTTAAAGAAGTAAATCTGAAGGAATTCCCCTGAAAGCGACTCATTCATGGAGTAAAACGGGCTGGAAGAAGAAGGGAGACGTTTGGGGATCATGAGTACAGGTATGAAGAAGCCACCGGTTGCTCCCAAACCCAGGCTGCTTCCTCCTCAGAAGTCAGCTCCTCCTCCAATCGCACCTAAACCTGAAATTTCACCCCCTACTCCATCTCCTTCTGTCGGAAAACGAGGAAAACCTGCTGTAGCCCCTAAACCATGTTTACCCAAGATAAGCCCTAAAGCACAACAGAAACCTCCACCATGCCTCTCTCAAAGCCCAGGCCTGGCCAGACAAAACAAAACCCAGAGCCTCACTCTCTCGAAAAATGGGGGTCCATCCATACCGTCTTTACGGCTCTCGCGTTATATCATACCACCCTGTTCTGAAGATCACCGCATAAGAAATGGCAAATCAAGGTGTTCTGAAGACAGAAATGAACCAGAAGACAAACATATGCTAAAAGATGAAGAAAGCTCACCGGAGAAAGTAATCTGCCACATCACAAAGGAAGTACAAACACACTCTCCTTCAGATGTAcctgaagaaaaacacacaccagtgcaAGTGCACACTATCTCCACAGCTTGGGTTCAGAATCAAGACCAACCTGTTGAGCAGAGTCAGTCTGTGGCTTCACACATGCAGAGCTCCAACAATAACAGTGTGCACGCAGATATTAGTGTCCCAGCAGCACCTAGTAAGCCCCTTCCTGTACCCCAGCCACGGCGACCTCCTAGAACCCTTCTCCTTCGTCAGAACGTGGTGGAGGATTCTCCGCCAGAGACTCCAACGCAAAGTCCTGAAGACGCATCTTCGCCAGAAGTGCCTGAAAACATCTTGGCATCTTCCAGTACCCTTTCAGACACTACTCTAGACTCATCGCACAACAAGGAGAACATTGAAAATGAGGAAAACCCCTCCCAATGCATAAACTTTACAGACTCCACCCACAGCTTAGGCTCCACCCACAGCACAGACTCCAGTCATAGAAGCAACGGAAACAGTGTTCTACACCAAGAACCCATTTACCCTTCTGATCCCCTTATTACAGAGCCCCTTTTCTGTAAAGTTTCTGTatctgcagcagcagtggaggaaagggaagaggaagaggaggagctacaaccaccagccccgccccctcgccaAAAGTCCCTCCATCAAAAAGGTAATTTCACTTCATGCTCACTGGACAATCTTACTCTGTCTGATCATGCTGACCCTTGCAACACTGATGATGTTAAGATCAGTAATGATCAGGAGGTTGATGATGATGGTAACAATaatgatgaagaagaagaaggtgcTTACGGCAATTTTGCCCGGTATTCACTCACAAGGAGTTTACCCAAACAAATCAGACTCGGTTGTGGACCTCGAGTCACGACGATAACCAAGGCAGCATCTGCGGAGGAACAGTCCCCAAAGGTCGTTCCGAAAAAGCCCCAGAGGCACAGCCTACCTGCATCAGCAGTGTTGaggaaacaaaacacacctcctcaaacacaaacaccagCGCCTACACCGGCCCCACCACCTGAACCTGCTCCAGCCATCTTTGGAGAATTACCTGCACCTCCCACCGAGAAATCATCACTGTGGCGCATCACCTTTCCAGGAATACCTCTTTTTATCAAGCAGCAGCCAAATCGCAGCAGCAGCCAGCCACAAGCCAGTGGGACAAGGCCTTTCCTGGTCAAGCAGCGAGCAAAGTCCTTCTCTTCTGCAGATCTCCTGCGAGTGGGCTCCCCAGCAAGTTCTGAAGCAGCCGAGCAACTGGTGCGTTCGGAGCAAAAGCGCCGCAGTCTTAGGAAGCTTCTGGAGTTGCGGACTTGTGTGAAGCTGCTTCCGAAGCTGCTGAGGAGCGGTCAGTCTCTGGACtgcaccagcaccagcatcgAGTCGGACGATTGCACGAACACTTCAGCCATCAGCAGCAAGGTTACCTCAGCTGATGACGAGGGTTCACTGGACGATGGTGATGGTGACTGTGGAGTAGAGTACGAGAACGTTCCACTCTATGAGGAGATCCCGGAATATATGAACCTGCCCTGGGTCTACTCCCACCAGAATGAAGACACTGGCGTCTATGAAGTGCAGGAACCATATGAATCACACAGGTCTCAGATGGGCGGCGACCTGTCCGAGGAAGAGCAGGGCCTGAGCTCGAATGAGGAGGATGATAACAGCTCCACCTCCAGCAAGGACGAGATGGACCAGGTCAAAAACAAAGAGGAGGTAGAAAGGGCGAAGAGGAACAAGGTGGTTCACATCGCAATGGAGATCATGAGCTCAGAGAAAGTATTTGTGGATGTTCTGAAGTTGCTGCACATTGATTTTCGTGATGCGGTGGCCAAGGCGACCCGTGCCAGTGGAAAGCCGGTGCTGGAGGAACGAGTGCTGAATCAGATACTGTACTATCTTCCGCAGCTCTATGAGCTCAACAAAGACCTGCTGAGAGAACTGGAGGAGAGAGTGGCACACTGGTCAGATCACCAGAGGCTAGCTGACATCTTCGTGCAGAAGGGTCCGTATCTGAAGATGTACTCCACATATATCCGAGAGTTTGACCGCAATGTGGCTCTCCTGGATGAACAGTGCCGCAAAAACCCAGCATTTGCCACAGTGGTGCGGCAGTTTGAGACGAGTCCTCGCTGTGCCAGTCTGGCTCTGAAGCATTACTTACTGAAACCAGTGCAGCGCATTCCACAGTATCAGCTCCTCCTGACAGATTATTTGAAAAACCTCCCTGAGGACTCCTCAGACTACAAAGATACACAAACTGCCCTTGGTGTGGTGAAGGAAGTAGCGAACCATGCCAATGACATCATGAAACAAGGGGATAATTTTCAGAAGCTGATGCAGGTTCAGTACAGTTTGAACGGTCATCATGAAATCGTTCAGCCGGGAAGGGTATTCCTTAAAGAGGGCACCCTGATGAAACTGTCCAGAAAGGTCATGCAGCCCAGAATGTTCTTCctgTTTAATGACATTCTGTTGTACACCACTCCAGTGCAGTCTGGCCAGTATAAAGTCAACAGCATGCTCTCTCTGGCTGGCATGAAGgtcagcAAGCCAAGCCTGGAGGCTTATCAAAATGAACTGAACATTGAGAGTGTAGAACGCTCTTTCATCCTGTCAGCCagCTCAGCCACGGAGAGAGATGAATGGCTGGAAGCCATCGCCACAGCTATAGAAGATTACACCAGGAAAAAGATCTCTTTCATCTCCAGCCGAAGccaagagTCTGAGGGTTTGTCTGTTGATGGTCCTCCACTGGGATCTAAAGCTCCAATCTGGATCCCAGACCTTCGAACCACCATGTGTATGATCTGCACCTGCGAGTTCACACTCACCTGGAGGAGGCATCACTGCCGTGCCTGTGGCAAGgtTGTGTGCCAGGCATGTTCATCAAATAAATACTACCTGGAGTACCTTAAGAATCAACTGGCAAGAGTGTGTGACCAGTGCTATGCCAAACTCCAGCAGAAAGATAAAGGGGACCAGTCTGAAGTGTGTGTTTCACCCAGTGGGCGAAGCTCGGGCTCAGCCTTCTCCTTCTCTAGGAAACAAAAGAAGATTCCCTCAGCACTGAAAGAGGTTTCTGCAAACACTGAGAACTCCTCCATGAGTGGCTACCTGCACAGATctaaaggaaataaaaagcCATGGAAGAGACTGTGGTTTGTCATCAAGAATAAAGTTCTCTACACGTATGCTGCTAGTGAGGATGTTGCAGCGTTGGAGAGCCAGCCGTTACTGGGCTTTTTCTTACGAGAGGAAAAGTCTGGACCCGCACAGAAGCTGCAGTTCAAACTCTATCACAAAAACACTCTCTACTATATCTTCAGAGCAGATGATATCCCTACAGCCCAGAgatgGATTGAAGCGTTTCAGGAGGCCATGATTCTTTGACCAATCTGGAACAAATATGAAATAGCATTAGTCTGACTAGAAACTGTCTTCTGGCCTGCAAACAGTGAATGAGCAAATGGTGCTGAGCAAACAAACTGAGAAGACACCAAATAAAGAGAAGATGCTGGTGGATGCATTTTAAATTGACATCCTAA

Function

NR:

description
PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6-like

GO: NA

KEGG:

id description
K05724 FGD5_6; FYVE, RhoGEF and PH domain containing 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234965.3 True 4310 mRNA 0.49 21 13507378 13539050

Neighbor

gene id symbol gene type direction distance location
usp44 usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009 coding upstream 61706 13433569 ~ 13445672 (+)
LOC103026035 NA coding upstream 111115 13386538 ~ 13396263 (+)
LOC103036201 NA coding upstream 125463 13369680 ~ 13381915 (+)
st8sia1 st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490 coding upstream 204266 13271177 ~ 13303112 (+)
LOC103034836 NA coding upstream 264636 13210222 ~ 13242742 (+)
LOC103030426 nr2c1,LOC107689225,LOC107755159 coding downstream 5902 13544952 ~ 13557590 (+)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding downstream 22386 13561436 ~ 13565100 (+)
tmcc3 tmcc3 coding downstream 52562 13591612 ~ 13633235 (+)
rbm17 rbm17,LOC107748463,LOC107755150,LOC107663450 coding downstream 219278 13758328 ~ 13773588 (+)
pfkfb3 pfkfb3 coding downstream 247196 13786246 ~ 13806954 (+)
G63749 vezt,LOC107567659,LOC107667718 non-coding upstream 19760 13486399 ~ 13487618 (+)
G63743 NA non-coding upstream 31958 13472434 ~ 13475420 (+)
G63709 NA non-coding upstream 106068 13397632 ~ 13401310 (+)
G63514 NA non-coding upstream 181870 13325300 ~ 13325508 (+)
G63510 NA non-coding upstream 196207 13257901 ~ 13311171 (+)
G63756 NA non-coding downstream 2111 13541161 ~ 13542001 (+)
G63755 NA non-coding downstream 3563 13542613 ~ 13543511 (+)
G63791 NA non-coding downstream 34670 13573720 ~ 13677259 (+)
G63813 NA non-coding downstream 172859 13711909 ~ 13713440 (+)
G63827 NA non-coding downstream 215815 13754865 ~ 13755370 (+)
LOC111192955 NA other upstream 346011 13156226 ~ 13161367 (+)
G63432 NA other upstream 1038476 12468050 ~ 12468902 (+)
G63051 NA other upstream 3857291 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 4066814 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 4967255 8526218 ~ 8540123 (+)
gata3 gata3,LOC107555822 other downstream 628179 14167229 ~ 14242234 (+)
G64015 NA other downstream 1205685 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 2856276 16395326 ~ 16426623 (+)
G64289 NA other downstream 2900170 16439220 ~ 16442449 (+)
G64431 NA other downstream 3213993 16753043 ~ 16753560 (+)

Expression


Co-expression Network