tmcc3 (tmcc3)


Basic Information

Item Value
gene id tmcc3
gene name tmcc3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13591612 ~ 13633235 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234969.2
TTCAAAAGAAGGATTGGCTCACGAGACGCGGCTTCGTCGCTTGAGGAACAGGGCGCGAGGAGACGGAAGAACGGAGGGCGGACAGCGGCGGCTGGTTTACCGGGACAGCGGCGATGCCCTGCGCCACAGCGCCGGACAAAACTTTCCCCGAAGTGGCCCGGAGTTCGTGCGGAGAAACGGCGGCTGACGGAAGCGGTCTGGCTGTCCCTGGCACCATGCAGTGGGGCGGCTCTGAGACGTGCCTGGAGCTGGATGGCGAGGGGTCTGTTCAGGGCGGGAGCCGGGGGCGCCTGGGGCTGGATGGGCTGCAGCAGAAGGTCCTGAAGGTGACGGAGCAGCTGCGGATCGAGCAGGCCCTAAGGGACGAGAACGTGGCCGAGTACCTGAAGCTGATCAATAGTGCCGACAAGCAGCAGAGCGGACGCATCAAACAGGTCTTCGAGAAGAAGAACCAGAAATCCGCTCAGTCCATCGCCCAGCTGCAGCGCAAACTCGAGCAGTACCACCGCAAGATGAAGgagtgtgatgtcacttcctccaCTAATGGGtccaaacactcacactccCACAGCAAAGACGCGAAGGAAGCTTCCAAGGACAGTTTAAAAGAGTGCAAGGAAGCAGTGGCCAAGGGCAGCGGACGACACCCACAGCTAGACAagGTAAAGACCATCGGCCCGGGTGTGTCTCTTTCACCGCCTTTCTTCTTCAATAAGTCCCGCGGCTTCGCCAGTCTCATCCGCAACAAGTTCGGTAGTGCCGACAACATCGCCCACCTAAAAAGCTCCATGGAGACCGGTGGCGGGCTCCAGACAGAGGGGGCGGGGCGAGCGCTGAGCGGCAGCGCCACACTGACCAGTAAACCTAAATACCCGAGTGACGACGAGTGTTCTACAGGAACGTCTGTGTCTGTGGAAAGCAACGGGCACACGTCAGCCCTGGGGGCTGTGCAGAGTGAGGCAGGACCGGGGGAGGGCTTCAGTAGGCTGGCGGACGCTCTGGAGGAGGTGCGTGAGGTAAAGGAGGCACAGGCTCACCTGGCTGAGGACATTGAGAGTCTGAGGAGTCAGATGAAGCGTAACTACGGATTTATCACCCAGATGCTGCAGGAGGAAAAATACAGGTGCGAGCGGCTGGAGGATCAGCTGAATGACCTGACCGAGCTGCATCAGAATGAGACGGCCAACCTGAAACAGGAGCTGGCCAGCATTGAGGAGAAAGTAGCCTACCAGGCTTACGAACGGGCCCGAGACatgcagGAGGCGCTAGAGGTGTGTCAGACGCGGATCAGTAAGCTGgagttgcagcagcagcagcagcagttggtGCAGCTGGAGAGCGCCGATGCCAAAGTGCTGCTGGGAAAGTGCATCAACATCATGCTGGCTATTGCCACGGTCATCCTGGTGTGCGTCTCCACCGCCGCCAAGTTCACGGCGCCGCTGTTGCGGAGCCGCCTGCACATTCTCGGGAcctttgtgtgcgtgtgtgtgcttgCGCTGGGCTGGAGCCACTGGGAACATGTACAGTGTGCAGCAGAGAGGATGTTCCTGCCCAGATGAGGGACAAGACAAGTGTGtatggtgtatgtgtgtgttcgtaTTATAAATGTACACTGGAAAGGAAGGGAAATACACTGAATTTACTTCATACAAATGTGAACAGCAGAAAGATTTGATTGATGATATAGGATGCATAACTAGTAGACAAGATTCTGGTCCCATTGTTCCCGGTTTTGACCTCAAAGTTCGGTACAGAGGTTTAGCACTGTGGGATAAAAGTTGCATACTCTTCTAGCTTTTTATGTTACAGTTTAATTTTTTCTGCCCATAATCTTATAATATATCCTACcctaaacagtattttattaatatgaaagtaattactttacaataaggctcacaaataacagtacctACAAAAGTAATAAACCTCGTTAAACAGTTAAAGCTGATATCCGTAAGTTTTGAGATTTAGAGCCCTCTCTGAGAATGGGTCTTTTGCACCAAGCAATTGTTTCACGCCttcgtttctttgattttactacgAGTGATTAAGCTACTGAGCTCTatgtttccccttctgaagtctccattgctccaccagccactcgctttcagtaaaactgagccttatcctcttttagaggctttACATGTGAGGTAGGTACATAATGGCGCGACGTGGCCAAAAGAACTTCCGTGAAAAGCagcccgacaccccagtttttagaatgaatatattaggcttagcagggatggtcgttccagcacactggtaacAATAAACACACCCAGAAAtgtttctgctttcagtttacaaacaaaataatacggactgcctcTTTACGTAATGTCTCAGCTAATTATTAGTTCACTctaattaatacattataaaacattGCAAAATGTTAATGCCTGAggatgttgtaaataataatgaattgagaaaATGGTTAGAAGtgttgtaatgattaataatgtcctaactaacattaataattaataagttgagacattctgttgtaagtactgttcatgaatgtacccttattgtaaagtgttactgaagTAATGAATCCATTTGTAGGAAGTAAATTCAGTGCTGCTCTCCCAAACTGTCCTGGACTCATCACTACAGCCGGGCATTCGCAACAATGGACAGTTTCCTGAACAATggctttaaaaaggcttttatgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgactgcgaTGCTCGGAACATAATGACTTTACTACTGACACTGGAATTCCCGATTGTGAACATTGGAGTCATCACTACTGTTGGACGTTTGCGGCAATGAACTGTTCTGTTCTCTGAATTATGGCTTTAAAGGAAattgtttgtgtgcgtgtgtgtgtgcgtgttctGCTTCTCTACTCCAGCAGTAACGGGTCCGTTTCtgttaatgtactgtattaGTTGTTTTGTTCACCTGATCTACTATACTGGATTACTAGGGGTGCACCAGATTGACAAGGAAAATGTAATTCCTATTGGTCATAGGTCATGATACTAGTTTCCATCCCATGACTTCTGCCActttttgtcactttttgtatttatataaccATTTACTACAGTTGTTGGATCTGATTTAGCTGTGTCACAATTACATGGAGTCAATcattgatatacagctctggaaaaaatggagaccacttaaaaataatgagttttttttattttaccaaattataaatc
>XM_007234970.3
GCAAATTGACAGCAGACTGCTCAGCAGTTAGTTCAGTGCTTTAGGTGTTTGCTCTATTATAGTTAGTTTAATTTTGCTGTGTATTGTAAATGTGTATTATACTGTAACTTTTGATTGGACTGTGGATTTGGTGGATTTTACTTTACCTGTGGATTATGTATGTGTATTGTTCTATAGTTCTAGTTTGACTGTATTTTTGGATCGGACTGTAGCTGTGGATTGGATTGTAACAACggactgtaactgtaaattagGCTGTAACTGTAGACTGTAGCTGTGGATTAGAGCTGTGGATCATAACAATGTATTGAGTGTATTTGTAGATATAGATTAGACTGTACATTTGGATTTGAATGTAACCCAGATTGTTGTTGTCGATTGGACTCCAGCtgtgtttttaactgtactgcagcTGTAGGCATTTTGATTGGACTGCAGATTTGGATTGGACTGAATCTGTGGATTGGTCTGTAGctgtactgtacttttcaatggaCTGTACTGCAGCAGTTGTCAGCTCCATTATTTCAGTCAACAATAAACCAGATGCCTGCAGCATGCCCAGTGGCTTTTGCTAACACCTGAACTGACAGGCGGCTGACGGAAGCGGTCTGGCTGTCCCTGGCACCATGCAGTGGGGCGGCTCTGAGACGTGCCTGGAGCTGGATGGCGAGGGGTCTGTTCAGGGCGGGAGCCGGGGGCGCCTGGGGCTGGATGGGCTGCAGCAGAAGGTCCTGAAGGTGACGGAGCAGCTGCGGATCGAGCAGGCCCTAAGGGACGAGAACGTGGCCGAGTACCTGAAGCTGATCAATAGTGCCGACAAGCAGCAGAGCGGACGCATCAAACAGGTCTTCGAGAAGAAGAACCAGAAATCCGCTCAGTCCATCGCCCAGCTGCAGCGCAAACTCGAGCAGTACCACCGCAAGATGAAGgagtgtgatgtcacttcctccaCTAATGGGtccaaacactcacactccCACAGCAAAGACGCGAAGGAAGCTTCCAAGGACAGTTTAAAAGAGTGCAAGGAAGCAGTGGCCAAGGGCAGCGGACGACACCCACAGCTAGACAagGTAAAGACCATCGGCCCGGGTGTGTCTCTTTCACCGCCTTTCTTCTTCAATAAGTCCCGCGGCTTCGCCAGTCTCATCCGCAACAAGTTCGGTAGTGCCGACAACATCGCCCACCTAAAAAGCTCCATGGAGACCGGTGGCGGGCTCCAGACAGAGGGGGCGGGGCGAGCGCTGAGCGGCAGCGCCACACTGACCAGTAAACCTAAATACCCGAGTGACGACGAGTGTTCTACAGGAACGTCTGTGTCTGTGGAAAGCAACGGGCACACGTCAGCCCTGGGGGCTGTGCAGAGTGAGGCAGGACCGGGGGAGGGCTTCAGTAGGCTGGCGGACGCTCTGGAGGAGGTGCGTGAGGTAAAGGAGGCACAGGCTCACCTGGCTGAGGACATTGAGAGTCTGAGGAGTCAGATGAAGCGTAACTACGGATTTATCACCCAGATGCTGCAGGAGGAAAAATACAGGTGCGAGCGGCTGGAGGATCAGCTGAATGACCTGACCGAGCTGCATCAGAATGAGACGGCCAACCTGAAACAGGAGCTGGCCAGCATTGAGGAGAAAGTAGCCTACCAGGCTTACGAACGGGCCCGAGACatgcagGAGGCGCTAGAGGTGTGTCAGACGCGGATCAGTAAGCTGgagttgcagcagcagcagcagcagttggtGCAGCTGGAGAGCGCCGATGCCAAAGTGCTGCTGGGAAAGTGCATCAACATCATGCTGGCTATTGCCACGGTCATCCTGGTGTGCGTCTCCACCGCCGCCAAGTTCACGGCGCCGCTGTTGCGGAGCCGCCTGCACATTCTCGGGAcctttgtgtgcgtgtgtgtgcttgCGCTGGGCTGGAGCCACTGGGAACATGTACAGTGTGCAGCAGAGAGGATGTTCCTGCCCAGATGAGGGACAAGACAAGTGTGtatggtgtatgtgtgtgttcgtaTTATAAATGTACACTGGAAAGGAAGGGAAATACACTGAATTTACTTCATACAAATGTGAACAGCAGAAAGATTTGATTGATGATATAGGATGCATAACTAGTAGACAAGATTCTGGTCCCATTGTTCCCGGTTTTGACCTCAAAGTTCGGTACAGAGGTTTAGCACTGTGGGATAAAAGTTGCATACTCTTCTAGCTTTTTATGTTACAGTTTAATTTTTTCTGCCCATAATCTTATAATATATCCTACcctaaacagtattttattaatatgaaagtaattactttacaataaggctcacaaataacagtacctACAAAAGTAATAAACCTCGTTAAACAGTTAAAGCTGATATCCGTAAGTTTTGAGATTTAGAGCCCTCTCTGAGAATGGGTCTTTTGCACCAAGCAATTGTTTCACGCCttcgtttctttgattttactacgAGTGATTAAGCTACTGAGCTCTatgtttccccttctgaagtctccattgctccaccagccactcgctttcagtaaaactgagccttatcctcttttagaggctttACATGTGAGGTAGGTACATAATGGCGCGACGTGGCCAAAAGAACTTCCGTGAAAAGCagcccgacaccccagtttttagaatgaatatattaggcttagcagggatggtcgttccagcacactggtaacAATAAACACACCCAGAAAtgtttctgctttcagtttacaaacaaaataatacggactgcctcTTTACGTAATGTCTCAGCTAATTATTAGTTCACTctaattaatacattataaaacattGCAAAATGTTAATGCCTGAggatgttgtaaataataatgaattgagaaaATGGTTAGAAGtgttgtaatgattaataatgtcctaactaacattaataattaataagttgagacattctgttgtaagtactgttcatgaatgtacccttattgtaaagtgttactgaagTAATGAATCCATTTGTAGGAAGTAAATTCAGTGCTGCTCTCCCAAACTGTCCTGGACTCATCACTACAGCCGGGCATTCGCAACAATGGACAGTTTCCTGAACAATggctttaaaaaggcttttatgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgactgcgaTGCTCGGAACATAATGACTTTACTACTGACACTGGAATTCCCGATTGTGAACATTGGAGTCATCACTACTGTTGGACGTTTGCGGCAATGAACTGTTCTGTTCTCTGAATTATGGCTTTAAAGGAAattgtttgtgtgcgtgtgtgtgtgcgtgttctGCTTCTCTACTCCAGCAGTAACGGGTCCGTTTCtgttaatgtactgtattaGTTGTTTTGTTCACCTGATCTACTATACTGGATTACTAGGGGTGCACCAGATTGACAAGGAAAATGTAATTCCTATTGGTCATAGGTCATGATACTAGTTTCCATCCCATGACTTCTGCCActttttgtcactttttgtatttatataaccATTTACTACAGTTGTTGGATCTGATTTAGCTGTGTCACAATTACATGGAGTCAATcattgatatacagctctggaaaaaatggagaccacttaaaaataatgagttttttttattttaccaaattataaatc
>XM_015601793.2
aTTTCAAGAGTACTGCATTTTATTTGGCGATATAATTGAGTACAATctgatatggcacaccacttATTGAACATGTAGCAGCAAGTGTCTTCACTCCctttaaaaaatcagtgttaaggctgtgatgtcactgatgctACTTAAAAGACACTTTTTAAAGGGTGGGGTTATCCCAAGATGACAGGGTGGGCAGTGAATTTTTGGACAACTATGCTGtgacacaaaaggcatgttatACTGATACTGTGTCCTTGTGTGTGAATCTTCATAATGATAGGACAgcatgtttacagtgtaaatacaGACGAGTCTTTTTGCTGGACCTCAGTGGAAATGATGTAGTTCTCACCACAGTGTTTTGAGATAACCTAAAATAGACAACAGACTGCCTTTTATTACTGAGGCGGCTGACGGAAGCGGTCTGGCTGTCCCTGGCACCATGCAGTGGGGCGGCTCTGAGACGTGCCTGGAGCTGGATGGCGAGGGGTCTGTTCAGGGCGGGAGCCGGGGGCGCCTGGGGCTGGATGGGCTGCAGCAGAAGGTCCTGAAGGTGACGGAGCAGCTGCGGATCGAGCAGGCCCTAAGGGACGAGAACGTGGCCGAGTACCTGAAGCTGATCAATAGTGCCGACAAGCAGCAGAGCGGACGCATCAAACAGGTCTTCGAGAAGAAGAACCAGAAATCCGCTCAGTCCATCGCCCAGCTGCAGCGCAAACTCGAGCAGTACCACCGCAAGATGAAGgagtgtgatgtcacttcctccaCTAATGGGtccaaacactcacactccCACAGCAAAGACGCGAAGGAAGCTTCCAAGGACAGTTTAAAAGAGTGCAAGGAAGCAGTGGCCAAGGGCAGCGGACGACACCCACAGCTAGACAagGTAAAGACCATCGGCCCGGGTGTGTCTCTTTCACCGCCTTTCTTCTTCAATAAGTCCCGCGGCTTCGCCAGTCTCATCCGCAACAAGTTCGGTAGTGCCGACAACATCGCCCACCTAAAAAGCTCCATGGAGACCGGTGGCGGGCTCCAGACAGAGGGGGCGGGGCGAGCGCTGAGCGGCAGCGCCACACTGACCAGTAAACCTAAATACCCGAGTGACGACGAGTGTTCTACAGGAACGTCTGTGTCTGTGGAAAGCAACGGGCACACGTCAGCCCTGGGGGCTGTGCAGAGTGAGGCAGGACCGGGGGAGGGCTTCAGTAGGCTGGCGGACGCTCTGGAGGAGGTGCGTGAGGTAAAGGAGGCACAGGCTCACCTGGCTGAGGACATTGAGAGTCTGAGGAGTCAGATGAAGCGTAACTACGGATTTATCACCCAGATGCTGCAGGAGGAAAAATACAGGTGCGAGCGGCTGGAGGATCAGCTGAATGACCTGACCGAGCTGCATCAGAATGAGACGGCCAACCTGAAACAGGAGCTGGCCAGCATTGAGGAGAAAGTAGCCTACCAGGCTTACGAACGGGCCCGAGACatgcagGAGGCGCTAGAGGTGTGTCAGACGCGGATCAGTAAGCTGgagttgcagcagcagcagcagcagttggtGCAGCTGGAGAGCGCCGATGCCAAAGTGCTGCTGGGAAAGTGCATCAACATCATGCTGGCTATTGCCACGGTCATCCTGGTGTGCGTCTCCACCGCCGCCAAGTTCACGGCGCCGCTGTTGCGGAGCCGCCTGCACATTCTCGGGAcctttgtgtgcgtgtgtgtgcttgCGCTGGGCTGGAGCCACTGGGAACATGTACAGTGTGCAGCAGAGAGGATGTTCCTGCCCAGATGAGGGACAAGACAAGTGTGtatggtgtatgtgtgtgttcgtaTTATAAATGTACACTGGAAAGGAAGGGAAATACACTGAATTTACTTCATACAAATGTGAACAGCAGAAAGATTTGATTGATGATATAGGATGCATAACTAGTAGACAAGATTCTGGTCCCATTGTTCCCGGTTTTGACCTCAAAGTTCGGTACAGAGGTTTAGCACTGTGGGATAAAAGTTGCATACTCTTCTAGCTTTTTATGTTACAGTTTAATTTTTTCTGCCCATAATCTTATAATATATCCTACcctaaacagtattttattaatatgaaagtaattactttacaataaggctcacaaataacagtacctACAAAAGTAATAAACCTCGTTAAACAGTTAAAGCTGATATCCGTAAGTTTTGAGATTTAGAGCCCTCTCTGAGAATGGGTCTTTTGCACCAAGCAATTGTTTCACGCCttcgtttctttgattttactacgAGTGATTAAGCTACTGAGCTCTatgtttccccttctgaagtctccattgctccaccagccactcgctttcagtaaaactgagccttatcctcttttagaggctttACATGTGAGGTAGGTACATAATGGCGCGACGTGGCCAAAAGAACTTCCGTGAAAAGCagcccgacaccccagtttttagaatgaatatattaggcttagcagggatggtcgttccagcacactggtaacAATAAACACACCCAGAAAtgtttctgctttcagtttacaaacaaaataatacggactgcctcTTTACGTAATGTCTCAGCTAATTATTAGTTCACTctaattaatacattataaaacattGCAAAATGTTAATGCCTGAggatgttgtaaataataatgaattgagaaaATGGTTAGAAGtgttgtaatgattaataatgtcctaactaacattaataattaataagttgagacattctgttgtaagtactgttcatgaatgtacccttattgtaaagtgttactgaagTAATGAATCCATTTGTAGGAAGTAAATTCAGTGCTGCTCTCCCAAACTGTCCTGGACTCATCACTACAGCCGGGCATTCGCAACAATGGACAGTTTCCTGAACAATggctttaaaaaggcttttatgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgactgcgaTGCTCGGAACATAATGACTTTACTACTGACACTGGAATTCCCGATTGTGAACATTGGAGTCATCACTACTGTTGGACGTTTGCGGCAATGAACTGTTCTGTTCTCTGAATTATGGCTTTAAAGGAAattgtttgtgtgcgtgtgtgtgtgcgtgttctGCTTCTCTACTCCAGCAGTAACGGGTCCGTTTCtgttaatgtactgtattaGTTGTTTTGTTCACCTGATCTACTATACTGGATTACTAGGGGTGCACCAGATTGACAAGGAAAATGTAATTCCTATTGGTCATAGGTCATGATACTAGTTTCCATCCCATGACTTCTGCCActttttgtcactttttgtatttatataaccATTTACTACAGTTGTTGGATCTGATTTAGCTGTGTCACAATTACATGGAGTCAATcattgatatacagctctggaaaaaatggagaccacttaaaaataatgagttttttttattttaccaaattataaatc

Function

symbol description
tmcc3 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC3 (transmembrane and coiled-coil domain family 3).

NR:

description
PREDICTED: transmembrane and coiled-coil domains protein 3 isoform X2

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234969.2 False 3229 mRNA 0.48 5 13593116 13633235
XM_007234970.3 True 3643 mRNA 0.46 5 13591612 13633235
XM_015601793.2 False 3453 mRNA 0.46 5 13593856 13633235

Neighbor

gene id symbol gene type direction distance location
ndufa12 ndufa12,LOC107667714,LOC107755161 coding upstream 26512 13561436 ~ 13565100 (+)
LOC103030426 nr2c1,LOC107689225,LOC107755159 coding upstream 34022 13544952 ~ 13557590 (+)
fgd6 NA coding upstream 52562 13507378 ~ 13539050 (+)
usp44 usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009 coding upstream 145940 13433569 ~ 13445672 (+)
LOC103026035 NA coding upstream 195349 13386538 ~ 13396263 (+)
rbm17 rbm17,LOC107748463,LOC107755150,LOC107663450 coding downstream 125093 13758328 ~ 13773588 (+)
pfkfb3 pfkfb3 coding downstream 153011 13786246 ~ 13806954 (+)
itih5 itih5 coding downstream 381881 14015116 ~ 14042802 (+)
itih2 itih2,LOC107748478,LOC107666937 coding downstream 423550 14056785 ~ 14081113 (+)
atp5c1 atp5c1,LOC107728502,LOC107748457 coding downstream 457097 14090332 ~ 14098546 (+)
G63755 NA non-coding upstream 48101 13542613 ~ 13543511 (+)
G63756 NA non-coding upstream 49611 13541161 ~ 13542001 (+)
G63738 NA non-coding upstream 82015 13451746 ~ 13509597 (+)
G63813 NA non-coding downstream 78674 13711909 ~ 13713440 (+)
G63827 NA non-coding downstream 121630 13754865 ~ 13755370 (+)
G63978 NA non-coding downstream 749647 14382882 ~ 14383150 (+)
G63979 NA non-coding downstream 799736 14432971 ~ 14433787 (+)
G63992 NA non-coding downstream 840791 14474026 ~ 14474399 (+)
LOC111192955 NA other upstream 430245 13156226 ~ 13161367 (+)
G63432 NA other upstream 1122710 12468050 ~ 12468902 (+)
G63051 NA other upstream 3941525 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 4151048 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 5051489 8526218 ~ 8540123 (+)
gata3 gata3,LOC107555822 other downstream 533994 14167229 ~ 14242234 (+)
G64015 NA other downstream 1111500 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 2762091 16395326 ~ 16426623 (+)
G64289 NA other downstream 2805985 16439220 ~ 16442449 (+)
G64431 NA other downstream 3119808 16753043 ~ 16753560 (+)

Expression


Co-expression Network