LOC103032078 (LOC108437708,LOC108275412)


Basic Information

Item Value
gene id LOC103032078
gene name LOC108437708,LOC108275412
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 29623051 ~ 29636730 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235041.3
TGCAGGATTTGAATCTCAGACAGGAAAACGGCTCAGCGCTCAGACTGCAAGAGTTCACTAAGCCTGAAAACCAAAGACTAAAGAGTGGGGTTTATTTACCTCCTGTCTCTTCTCAGATACAGGAATACCACTGTAGGAGTATTGGTTTATATACTGGAGGAAGACTGGGGGGATTTTATCCGGCGTCGCCATGAGGAAAagTGAGATGCATGCCGCTGAATCAGTGGCATGTCTCAATAAAGCCCTCACACACCTCAGAGACATCTGGGAGGAGATTGGAATCCCTGAGGACCAGAGGGTGCAGCGGACTGATGCGGTTAGAATGCATGTCAAGAACCTGCTGACCATGATGATAGAAGAGGAGGAAGGGCTTAAAAAGAGGTTGCTGAGTAGTATTGGGACCTGTCGGAAAGAGCTGGACACACTGTGTGAGGAGCTTCAGCTTCCACCGTTTGAGgaggaagatggtcTGACCATGCTGCAGCTGGAGAGTGTGATTCGCACTCATTTGAAGGTGATGTTGAAGCAGAAGACTCAGAGAATGAACGAGCTGAAGGATCTGATACAGCAGGACCGGGAGCTGTGTGATATTTTGTGTGATAACCCTTATGCCATCAGTCCTGACCGTGTGCCCtctgctgagcagctgaaggaCTATAGTCAGCACATCGCCACCCGCAACCAGGAAAAGGAGCGCCGTCATGCAGAGTTTGTGACCATCAAGCGTCAGATTGTTTTGTGCATGGAGGACCTTGACCAGATGCCGGACACTAGCTTTGAGCGAGACGTGGTGTGTGAGGATGAGGAAGCATTCTGCCTGTCCACAGAAAATATCACTGCCCTCAAAGTGCTGCTGAACCAGTTGGAAAATCGAAAAGCAGAGAACGAGGCGCTGTGTGTATCCTACCGTGACCGTATTGGAGAGCTGTGGGAGAGGCTGCAGATCCCTCAGGATGAGAGGGACTCTATTGCTGAACACATGAAGAGCAGCAAAAAGAAGAACATGGAGGCTCTGCATGCAGAGCTGGAGCGTCTGAAGGAGCTGAAGATGAAGAACATGCAGAGCGTGATTGAAACAATCAGAGCAGAAATAGCACTCCTCTGGGAGAAGTGCTTCTACAGCCTAGAGCAGAGACAAGCTTTCGTTCCATATTATAGCGatGATTTCAGTGAGGAGTTGCTTGCTATGCACGAGGAAGAAGAGCAGAGGTTGAAACAGCATTATGAACATCACAGAGAGCTGTATGATGGCGTCACTAACTGGCAGAACAATTGGACCCTCTACCAGACACTGGAGAAAAAGGCCACAGATCCATCTCGATTTAACAACAGGGGAGGCAACCTGCTGCGGGAGGAGAAGCAGAGAGCAGATCTGCAAAAAAGTCTGCCCAAGCTGGAGAAGAGTCTGAAGACCCAGATTGAGCAGTGGGAGGCGGAGCAGGGTACACAGTTCCTGGTCAATGGGCAGCACTTTATGCAGTATGTCGAGGAGCAGTGGAACCTGCACCACctggagaaggagagagaaaagctGGAGAGGCAAATGAAGAAGAGCAAGCAAACTGAAGAGGATATGCTGTACGGAACATCCCTCCGAACCCCCACCAAGAGGAGGTTAGCAGGAACACCCACACCAGGGAAATCACGCAAGATGAATACCACCTCCAGTATCTCTAGCGCCTCTTGTAATACCACCCTACGCTCCATTTGTTACTCTCCATCCATGAGACCTCCCCTCTCAGCCAGCAAGGTTGGCACAGGGTTGCGAACACCGGCACGTGGCCGAACCCCACGTGGTCTGGAAAGGAATAAGGAGAACCTGTCTCAGCTTAGTGGAGCCCTGCGCACCATGACCTCCAGCCCACACAGGAGCAACTACTCCATCAACTCAGTCGCCAGCTCCTACTCTGAGTTTGCGAGGGATTGTGTCAACATTGAGTCCACAACCATCTCCAGcgAGAGCTCTCTCAGGCCTCACAATCCAACAGCAAAGCTAGAGTTCTGAACTCCACGATCACACGCTAAGTGCAAGTCCTGAGGATGGAACTGGGACACTTTGGTGGCGGTCGTCTCCTCTCAGCATTAACTTAACTCCAGATGAAGGGAAGAGTGTTTAAGAGAATTAATTTGAATGTAAACCACCtgcaaaaaaattgttttttgaggacttgtgtaaatattttactcCTATTTTATGGTTTCACGTTTCTAACATGTATCTTAGAATGAATCAGTCTTCCATGTGATGTCAGGATCAAGagtttttataaaaacttttcctttttttctctctaataAACAGAACGTTTTTTATTATGCTTTTTAATAGGAGCTTGTACAGAATGGTTTGGAGTCACAGAGGCTTTCTTTTGGAATATTCTGTCCtgtctgtatttattgttatgcTCTTTTCTACTACCTAACACTAGTCatttgttcttaaaatgtttcagttCCCACTTCACCACGCTGTTCTCAACCTGTAAAATAAATTTTCACTGAGGAAACCTG
>XM_007235042.3
TGCAGGATTTGAATCTCAGACAGGAAAACGGCTCAGCGCTCAGACTGCAAGAGTTCACTAAGCCTGAAAACCAAAGACTAAAGAGTGGGGTTTATTTACCTCCTGTCTCTTCTCAGATACAGGAATACCACTGTAGGAGTATTGGTTTATATACTGGAGGAAGACTGGGGGGATTTTATCCGGCGTCGCCATGAGGAAAagTGAGATGCATGCCGCTGAATCAGTGGCATGTCTCAATAAAGCCCTCACACACCTCAGAGACATCTGGGAGGAGATTGGAATCCCTGAGGACCAGAGGGTGCAGCGGACTGATGCGGTTAGAATGCATGTCAAGAACCTGCTGACCATGATGATAGAAGAGGAGGAAGGGCTTAAAAAGAGGTTGCTGAGTAGTATTGGGACCTGTCGGAAAGAGCTGGACACACTGTGTGAGGAGCTTCAGCTTCCACCGTTTGAGgaggaagatggtcTGACCATGCTGCAGCTGGAGAGTGTGATTCGCACTCATTTGAAGGTGATGTTGAAGCAGAAGACTCAGAGAATGAACGAGCTGAAGGATCTGATACAGCAGGACCGGGAGCTGTGTGATATTTTGTGTGATAACCCTTATGCCATCAGTCCTGACCGTGTGCCCtctgctgagcagctgaaggaCTATAGTCAGCACATCGCCACCCGCAACCAGGAAAAGGAGCGCCGTCATGCAGAGTTTGTGACCATCAAGCGTCAGATTGTTTTGTGCATGGAGGACCTTGACCAGATGCCGGACACTAGCTTTGAGCGAGACGTGGTGTGTGAGGATGAGGAAGCATTCTGCCTGTCCACAGAAAATATCACTGCCCTCAAAGTGCTGCTGAACCAGTTGGAAAATCGAAAAGCAGAGAACGAGGCGCTGTGTGTATCCTACCGTGACCGTATTGGAGAGCTGTGGGAGAGGCTGCAGATCCCTCAGGATGAGAGGGACTCTATTGCTGAACACATGAAGAGCAGCAAAAAGAAGAACATGGAGGCTCTGCATGCAGAGCTGGAGCGTCTGAAGGAGCTGAAGATGAAGAACATGCAGAGCGTGATTGAAACAATCAGAGCAGAAATAGCACTCCTCTGGGAGAAGTGCTTCTACAGCCTAGAGCAGAGACAAGCTTTCGTTCCATATTATAGCGatGATTTCAGTGAGGAGTTGCTTGCTATGCACGAGGAAGAAGAGCAGAGGTTGAAACAGCATTATGAACATCACAGAGAGCTGTATGATGGCGTCACTAACTGGCAGAACAATTGGACCCTCTACCAGACACTGGAGAAAAAGGCCACAGATCCATCTCGATTTAACAACAGGGGAGGCAACCTGCTGCGGGAGGAGAAGCAGAGAGCAGATCTGCAAAAAAGTCTGCCCAAGCTGGAGAAGAGTCTGAAGACCCAGATTGAGCAGTGGGAGGCGGAGCAGGGTACACAGTTCCTGGTCAATGGGCAGCACTTTATGCAGTATGTCGAGGAGCAGTGGAACCTGCACCACctggagaaggagagagaaaagctGGAGAGGCAAATGAAGAAGAGCAAGCAAACTGAAGAGGATATGCTGTACGGAACATCCCTCCGAACCCCCACCAAGAGGAGGTTAGCAGGAACACCCACACCAGGGAAATCACGCAAGATGAATACCACCTCCAGTATCTCTAGCGCCTCTTGTAATACCACCCTACGCTCCATTTGTTACTCTCCATCCATGAGACCTCCCCTCTCAGCCAGCAAGGTTGGCACAGGGTTGCGAACACCGGCACGTGGCCGAACCCCACGTGGTCTGGAAAGGAATAAGGAGAACCTGTCTCAGCTTAGTGGAGCCCTGCGCACCATGACCTCCAGCCCACACAGGAGCAACTACTCCATCAACTCAGTCGCCAGCTCCTACTCTGAGTTTGCGcgAGAGCTCTCTCAGGCCTCACAATCCAACAGCAAAGCTAGAGTTCTGAACTCCACGATCACACGCTAAGTGCAAGTCCTGAGGATGGAACTGGGACACTTTGGTGGCGGTCGTCTCCTCTCAGCATTAACTTAACTCCAGATGAAGGGAAGAGTGTTTAAGAGAATTAATTTGAATGTAAACCACCtgcaaaaaaattgttttttgaggacttgtgtaaatattttactcCTATTTTATGGTTTCACGTTTCTAACATGTATCTTAGAATGAATCAGTCTTCCATGTGATGTCAGGATCAAGagtttttataaaaacttttcctttttttctctctaataAACAGAACGTTTTTTATTATGCTTTTTAATAGGAGCTTGTACAGAATGGTTTGGAGTCACAGAGGCTTTCTTTTGGAATATTCTGTCCtgtctgtatttattgttatgcTCTTTTCTACTACCTAACACTAGTCatttgttcttaaaatgtttcagttCCCACTTCACCACGCTGTTCTCAACCTGTAAAATAAATTTTCACTGAGGAAACCTG

Function

NR:

description
PREDICTED: protein regulator of cytokinesis 1-like isoform X1

GO:

id name namespace
GO:0000910 cytokinesis biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235041.3 True 2511 mRNA 0.48 15 29623051 29636730
XM_007235042.3 False 2473 mRNA 0.48 14 29623051 29636730

Neighbor

gene id symbol gene type direction distance location
syt12 syt12,LOC107680125,LOC107573158,LOC107559999,LOC107673296 coding downstream 3983 29595489 ~ 29619068 (-)
cat cat,LOC107573156 coding downstream 30792 29580320 ~ 29592259 (-)
LOC103033237 ifitm5,LOC103033237,LOC108438128,LOC107559973,LOC107736613,LOC107577508,LOC107680123,LOC108274514 coding downstream 72690 29546603 ~ 29550361 (-)
LOC103033560 LOC108438141 coding downstream 77674 29529697 ~ 29545377 (-)
ptdss2 ptdss2 coding downstream 130701 29474102 ~ 29492350 (-)
LOC103031543 NA coding upstream 2945 29639675 ~ 29656393 (-)
LOC103022709 peak1 coding upstream 28615 29665345 ~ 29812561 (-)
hmg20a hmg20a,LOC107560003,LOC107727687 coding upstream 197352 29834082 ~ 29844607 (-)
LOC103043802 impdh1b,LOC108432555,LOC104968094,LOC107725554 coding upstream 600199 30236929 ~ 30281397 (-)
irf5 irf5 coding upstream 700807 30337537 ~ 30371368 (-)
G67517 NA non-coding downstream 55293 29566759 ~ 29567758 (-)
G67500 NA non-coding downstream 119740 29501604 ~ 29503311 (-)
G67437 NA non-coding downstream 129992 29438236 ~ 29493059 (-)
G67436 commd9 non-coding downstream 181623 29440633 ~ 29441428 (-)
G67339 NA non-coding downstream 465857 29155695 ~ 29157194 (-)
G67529 NA non-coding upstream 25283 29662013 ~ 29662676 (-)
G67537 NA non-coding upstream 82499 29719229 ~ 29724088 (-)
G67566 NA non-coding upstream 298975 29935705 ~ 29935944 (-)
G67572 NA non-coding upstream 403535 30040265 ~ 30040488 (-)
G67575 NA non-coding upstream 428629 30065359 ~ 30065694 (-)
fuk fuk other downstream 155824 29443356 ~ 29467227 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other downstream 1490263 28121260 ~ 28132788 (-)
tmem258 NA other downstream 1587090 28032701 ~ 28035961 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 4092071 25516515 ~ 25530980 (-)
G66642 NA other downstream 4961149 24660024 ~ 24661902 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 961638 30598368 ~ 30600908 (-)
G67755 NA other upstream 1165980 30802710 ~ 30805567 (-)
G67830 NA other upstream 1339147 30975877 ~ 30992883 (-)
tmem60 tmem60 other upstream 1444050 31080780 ~ 31091017 (-)
G67863 NA other upstream 1457016 31093746 ~ 31149733 (-)

Expression


Co-expression Network