LOC103033872


Basic Information

Item Value
gene id LOC103033872
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 29500727 ~ 29503311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235047.3
ACCCCCCACCGCCTGAAACACAAATCACGAGTCTCCCACTCCTTGGCGCCATCCCAAAGAAGCTGTGGACCAATCTGCGTGCAGCGGGGGTGGTCCTCCGCCCGAGGGGGAGGGTTTCTTATGGGCTACACGTACCCGCAAAGGCGAGGGGGACTTTAAATCACAATCCTTCAGTGCTCAGCAAGATCGACTCGGGGCTGAGATTCTCTTTACGGTGGTCAGCGCAACGTGTTTTTCGGGTCGTAGCCCACGTTTGGTAGATCAGCAGCAGATCAGCGTTTTGACTCTGTTTAAATTCGGAAAGACTCGACTCGAGATGTCCACGGTTCAGATTCCCAGCAGCGGCGGCGGTGTCGGGGCGCTGGCCTCCCCCAGGACTTTCCCGCATGTCCACAGGGACACGACGCCGCGAGCCCGGGTTTGCCGAAGCCTTTTCGGACCGGTGGATCACGAAGAGCTGAACCGCGAAATGAAGGCGAAGCTGCGCGAGATCTCCGAGCGGGACCAGCAGAGGTGGAACTTTAACTTCGGCGCCGGAGTGCCGCTGCTCGGGGAGTACGAGTGGGAGGAAGCGGCCGGGGAGGCGTCCCCAGCTTTCTACCAGGAGTGCGTGCGGACAGCGAGGAGCAGGGCTGCAGGGGCGAGCCACAGACCCGCACAGCAGCcccaggaggaggaggacagtGGGATCTGCAGCGCCGAGAGCCGCGTTTTCCCCGAGAATGTGAACGAAAACAAGAGCACGGGCTCTTTGGGCTTTACGGGAAAACTGAGCTGCAAAAAAACTGCCCGGAGGAAAAGACCCTCCCCGCTCACCAACACCCACATCACAGATTTCTACTGTAAGCGCAGGAGCGGAGTTGTTGTTGGTGGTGTAAAGCACAGCGGTGGTGATCACAGCAGCGGCAGAAAACCCTTTCCTTCAGCAGAGCAAACTCCACGAAAACAGCTCCGGTGAAGAAGGATTTTAACCCTCCGTTTGGTCAGAAAATCTAGAAAGCTCCTCCGGCGTTCATGACTGGAGACTCCAGAGGACTCGCTCGGAGTGAAGGAAGGAGCTTGGTGTGTTTGCTCTGTGACAAGACAAATATAAGTCAACTTCTCAGGACTGCGCTGTATAGCCCATCGCTCCAAGCCTGAGAGAATGCTGAAGAATGTGCAAATAAGAAGAAATGTAGCAAAACTGTTTTGTACTACAGTTGTTTCAAACAATTAACAACTACTGGTCTGTGTAATTAACATCTAACCTCCGCCTACATTTCAAAAGGGCCTCCATTACAGGCCACGCTGACTATTGGACCTTTTGGTTTCTTAGTTTTCACACCCTGAGTGTTcagatggtgtttttttttgttatccaCTTAAGTGCCGTGCCGTCATGTTGCCCAAGTGTCTTTTTCCTAAATTCACATCATGCCGCAGCTTAATTAGAGGctggtctttttatttttgacaaCAATTTCTGTAAAACATGCTTaagaatgtttgttttttctttaaaaagattaagAAACACAGCCAGAAGTTTGTCCTGCTGTTTAGATTAATGTTACCTTTTAATAATCAACCGCAAATTTCAAAAACTGGTTTACCAACTCCATGTagggttttttttagttaataatTATGTATGTGCAAGTAGGGCTGAACAGGCCTAAATCGAGAACTTTCCCAAACAATCTGAAGGTATAGCTGCTTGACAGAAAGTCAATTTTGGCAGAGCTGGGGTGGGGGAAATGGGCTGATTGTGTATACATTTGGTTAAATGAGTAAAGCTTTAAAGATACGACATATGGGGCCCTGAGgcagtttttgttgtttttttgtaaatatgctaaaatatattgtaaagcacattttaatttaatttatttatgtttcattgtaggtgtctcttgttttttttactttgtgtttgcAATCATACTGTATGCTGTAGCTTGTCAATGTAGCATTAACCCTGAAAATGGGGCCCATCATGCATCTGAGccattttgtcacattttgtcAATGTGTGAGAAATAAATTTGTTAAGATAATGTACAAAGA

Function

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0042325 regulation of phosphorylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235047.3 True 2049 mRNA 0.48 3 29500727 29503311

Neighbor

gene id symbol gene type direction distance location
commd9 commd9 coding upstream 59196 29438561 ~ 29441531 (+)
rtcb rtcb coding upstream 325744 29162678 ~ 29174983 (+)
ptn ptn,LOC106609498 coding upstream 1043715 28354062 ~ 28457012 (+)
tmem138 tmem138,LOC105904230,LOC107561148,LOC107551428,LOC107655161 coding upstream 1468729 28025877 ~ 28031998 (+)
LOC103045890 LOC108432719 coding upstream 1519538 27960717 ~ 27981189 (+)
LOC103030285 NA coding downstream 324168 29827479 ~ 29832721 (+)
LOC103044724 NA coding downstream 695738 30199049 ~ 30236846 (+)
calu calua,LOC108432523,LOC107587143,LOC107725564,LOC107578970 coding downstream 791284 30294595 ~ 30304041 (+)
tnpo3 tnpo3 coding downstream 804388 30307699 ~ 30330031 (+)
lamtor4 lamtor4,si:dkey-159a18.7,LOC107590499,LOC107557308,LOC107699063,LOC107694163 coding downstream 1098879 30602190 ~ 30605157 (+)
G67416 NA non-coding upstream 7739 29491765 ~ 29492988 (+)
G67428 NA non-coding upstream 27543 29469851 ~ 29473184 (+)
G67418 NA non-coding upstream 55469 29443520 ~ 29445258 (+)
G67376 NA non-coding upstream 63370 29436318 ~ 29437357 (+)
LOC111193011 NA non-coding upstream 146654 29211775 ~ 29354073 (+)
G67460 NA non-coding downstream 56510 29559821 ~ 29561371 (+)
G67461 NA non-coding downstream 58177 29561488 ~ 29565403 (+)
G67463 NA non-coding downstream 63454 29566765 ~ 29567759 (+)
G67455 NA non-coding downstream 77027 29580338 ~ 29629521 (+)
G67466 NA non-coding downstream 85543 29588854 ~ 29665242 (+)
oaz2 oaz2,LOC108432726 other upstream 1279870 28149260 ~ 28220857 (+)
LOC111192916 NA other upstream 3408608 26080452 ~ 26092119 (+)
cspg4 cspg4 other upstream 4199852 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 4816147 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 4948387 24518622 ~ 24552340 (+)
G67459 NA other downstream 53825 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 82665 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 784224 30287535 ~ 30289624 (+)
G67690 atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 1095290 30598601 ~ 30600595 (+)
G67692 arf5,zgc:77650,LOC105916194,LOC101172462,LOC107387912,LOC105020167,LOC105888566 other downstream 1105064 30608375 ~ 30611978 (+)

Expression


Co-expression Network