rpl18a (rpl18a)


Basic Information

Item Value
gene id rpl18a
gene name rpl18a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 29430600 ~ 29434091 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235049.2
tgtgtgtgtagaagaaGAGCGGGAGGTTAGAGGCGGAGCTCGAGCGCGTTACTGCTTCCTTTTCCACAGTGGCAGTCAGAGAGACACCATGAAGGCGTCTGGCACAcTTAGGGAGTACAAAGTTGTTGGGCGTCTCTTGCCCTCTGCCAAGAACCCAACTCCTCCTCTGTATCGCATGAGGATTTTCGCCCCCAACCATGTGGTGGCCAAGTCTCGCTTCTGGTACTTCGTCTCTCAGCTGAGGAAGATGAAGAAGGCATCTGGAGAGACTGTGTACTGTGGCCTGGTTCATGAGAAGACTCCTCTGAAAGTAAAGAACTTTGGCATCTGGCTGCGCTATGACTCCCGTAGTGGCACCCACAACATGTACCGCGAGTACAGAGACCTGACCACCTCTGGAGCAGTCACCCAGTGCTACCGTGATATGGGAGCTCGTCACCGTGCACGTGCCCATGCTATTCAGATCATGAAGGTGCAGGTGATCGCTGCTAACAAATGTCGTAGACCTGCCATCAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCCTGCCCCACAGGGTTCTGCgccagcagcacaagccccgcttcACCACCAGGAGACCAAACACATTCTTCTAAATTGTATGTTCTTGCTGTTAAGATTGCTGGGGAATTAAAGAAATATGACAAAACTAAA

Function

symbol description
rpl18a Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL18A (ribosomal protein L18a).

NR:

description
PREDICTED: 60S ribosomal protein L18a

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02882 RP-L18Ae, RPL18A; large subunit ribosomal protein L18Ae

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235049.2 True 677 mRNA 0.52 5 29430600 29434091

Neighbor

gene id symbol gene type direction distance location
LOC103035781 LOC103035781,LOC108438138 coding downstream 197180 29217916 ~ 29233420 (-)
xpot xpot,LOC107662216,LOC107658760 coding downstream 231481 29177672 ~ 29199119 (-)
fbxo7 NA coding downstream 278876 29141011 ~ 29151724 (-)
chrm2 chrm2,LOC108427087,LOC107561244,LOC107658987,LOC107707993,LOC107568718,LOC107662193 coding downstream 849915 28483128 ~ 28580685 (-)
psma4 psma4,LOC107680153,LOC107562288,LOC107560014 coding downstream 1201268 28223106 ~ 28229332 (-)
ptdss2 ptdss2 coding upstream 40011 29474102 ~ 29492350 (-)
LOC103033560 LOC108438141 coding upstream 95606 29529697 ~ 29545377 (-)
LOC103033237 ifitm5,LOC103033237,LOC108438128,LOC107559973,LOC107736613,LOC107577508,LOC107680123,LOC108274514 coding upstream 112512 29546603 ~ 29550361 (-)
cat cat,LOC107573156 coding upstream 146229 29580320 ~ 29592259 (-)
syt12 syt12,LOC107680125,LOC107573158,LOC107559999,LOC107673296 coding upstream 161398 29595489 ~ 29619068 (-)
G67339 NA non-coding downstream 273406 29155695 ~ 29157194 (-)
G67335 NA non-coding downstream 282626 29146955 ~ 29147974 (-)
G67325 NA non-coding downstream 681388 28748886 ~ 28749212 (-)
G67321 NA non-coding downstream 701429 28726583 ~ 28729171 (-)
G67310 NA non-coding downstream 777096 28652959 ~ 28653504 (-)
G67437 NA non-coding upstream 4145 29438236 ~ 29493059 (-)
G67436 commd9 non-coding upstream 6542 29440633 ~ 29441428 (-)
G67500 NA non-coding upstream 67513 29501604 ~ 29503311 (-)
G67517 NA non-coding upstream 132668 29566759 ~ 29567758 (-)
G67529 NA non-coding upstream 227922 29662013 ~ 29662676 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other downstream 1297812 28121260 ~ 28132788 (-)
tmem258 NA other downstream 1394639 28032701 ~ 28035961 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 3899620 25516515 ~ 25530980 (-)
G66642 NA other downstream 4768698 24660024 ~ 24661902 (-)
G66619 NA other downstream 4922319 24507834 ~ 24508281 (-)
fuk fuk other upstream 9265 29443356 ~ 29467227 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 1164277 30598368 ~ 30600908 (-)
G67755 NA other upstream 1368619 30802710 ~ 30805567 (-)
G67830 NA other upstream 1541786 30975877 ~ 30992883 (-)
tmem60 tmem60 other upstream 1646689 31080780 ~ 31091017 (-)

Expression


Co-expression Network