commd9 (commd9)


Basic Information

Item Value
gene id commd9
gene name commd9
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 29438561 ~ 29441531 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235050.3
gtggacctggcaaccctgctggGGATCACATGATTGTGGAAGTTAAAGATGGCTCCTGTAGCAGAGGAACATTTCAGCTCTCTGCAGCTCCTGTTAAAGGCTCCATCCAAAGATGTGGTGCGACAACTATGTGTGGACAGTTTCCCATCCAGAGCACACGAGTCTCGGGTTCTGATCGACAGCACTGCACAGACCCTCTCTGTGTCCAGCACTGAAGCTGCACAGgtgcTGACAGCatttcacacgctctcacatcACGTTGTGTACCATAATTTAACAGCAGCAGAACAAATTCTCTCTGTGTTCCCCGACACTTTCCACCCTAACCTCAAAAATCTCCTCACGAAGATCCTGCTGGAACAGAGtacgACGTGGCGAAATGATGCTTTGGCCAGTCAGATTTCTTTGCCACAGCTTGTAGACATGGAGTGGAGGGTGGACATGAAGACGGCCTCAGACTCAGTGAGCCGCATGGCTGTGCCTACTTGTATTTTGCACATGAAGATCCAGGATTCACCTTGTATGAGTGGCAGTGCTTGTGACTCTTCAGTCACTGTGGAGCTGAGCAAAGAAACTCTGGACACCATGCTGGATGGCCTGGGCCGCATCCGAGACCAGCTGTCCGCTGTGGCTGGAAAATAGACCCAATCAGACATTTTGTAGAAAAGTCCACAATTTACCAGTTTAATTAGTAGTTAACTGTTAATCAAGCCCGTATCTGATCACCCTGTTTGAGTGCATGTGCCACAAAACCAAGactaaagcattttaaagcagGACTACATTTTCAAGTGAAAAAAATCAACAGAGATTTAAACAATAGTCTAGGGATCCTAACATGAAGGTTTTGGGGAATTTGTCCTCTGCCATTATAAAATCCCATTATTGCTAATACTGTGCCACAATCATGTatacaaatacagtatgtgttttttatatatgtgaTTGCCAGGGCAGCACTGACTgtcatgacaatatttttttttttcaatatattaattataatactaATTCATTGTCatcaaatgtaatttttttgttaacataaagtttataaattctctgaacttttaaaa

Function

symbol description
commd9 Orthologous to human COMMD9 (COMM domain containing 9).

NR:

description
COMM domain-containing protein 9 isoform X2

GO: NA

KEGG:

id description
K22565 COMMD9; COMM domain containing 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235050.3 True 1076 mRNA 0.43 6 29438561 29441531

Neighbor

gene id symbol gene type direction distance location
rtcb rtcb coding upstream 263578 29162678 ~ 29174983 (+)
ptn ptn,LOC106609498 coding upstream 981549 28354062 ~ 28457012 (+)
tmem138 tmem138,LOC105904230,LOC107561148,LOC107551428,LOC107655161 coding upstream 1406563 28025877 ~ 28031998 (+)
LOC103045890 LOC108432719 coding upstream 1457372 27960717 ~ 27981189 (+)
LOC111192885 NA coding upstream 1940834 27496795 ~ 27497727 (+)
LOC103033872 NA coding downstream 59196 29500727 ~ 29503311 (+)
LOC103030285 NA coding downstream 385948 29827479 ~ 29832721 (+)
LOC103044724 NA coding downstream 757518 30199049 ~ 30236846 (+)
calu calua,LOC108432523,LOC107587143,LOC107725564,LOC107578970 coding downstream 853064 30294595 ~ 30304041 (+)
tnpo3 tnpo3 coding downstream 866168 30307699 ~ 30330031 (+)
G67376 NA non-coding upstream 1204 29436318 ~ 29437357 (+)
LOC111193011 NA non-coding upstream 84488 29211775 ~ 29354073 (+)
G67331 NA non-coding upstream 288886 29146393 ~ 29149675 (+)
G67318 NA non-coding upstream 709390 28726583 ~ 28729171 (+)
G67320 NA non-coding upstream 709854 28728220 ~ 28728707 (+)
G67418 NA non-coding downstream 1989 29443520 ~ 29445258 (+)
G67428 NA non-coding downstream 28320 29469851 ~ 29473184 (+)
G67416 NA non-coding downstream 50234 29491765 ~ 29492988 (+)
G67460 NA non-coding downstream 118290 29559821 ~ 29561371 (+)
G67461 NA non-coding downstream 119957 29561488 ~ 29565403 (+)
oaz2 oaz2,LOC108432726 other upstream 1217704 28149260 ~ 28220857 (+)
LOC111192916 NA other upstream 3346442 26080452 ~ 26092119 (+)
cspg4 cspg4 other upstream 4137686 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 4753981 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 4886221 24518622 ~ 24552340 (+)
G67459 NA other downstream 115605 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 144445 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 846004 30287535 ~ 30289624 (+)
G67690 atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 1157070 30598601 ~ 30600595 (+)
G67692 arf5,zgc:77650,LOC105916194,LOC101172462,LOC107387912,LOC105020167,LOC105888566 other downstream 1166844 30608375 ~ 30611978 (+)

Expression


Co-expression Network