LOC103035781 (LOC103035781,LOC108438138)


Basic Information

Item Value
gene id LOC103035781
gene name LOC103035781,LOC108438138
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 29217916 ~ 29233420 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235053.3
GTACAAGTAGGAGCAGAAGTCCTTGGCTAGTACGGACAGACTTCAAGCTAGTTTACAGCTGCTGAGGTATCTTCACTGGCTGTAAGTGAACTAAGGGGACACTTCTGAGAGACTACCTGAAGATCAGGATAATACtacaaaacaatatttttccAAAAAGCTCAGAAATTGGAGGATCGAAAAAACACTGTGGAACAAAACACTGCTGATCATCAGAACAACACTGAGCAGAAGGATGTTGTGTTCAAGGAGGCTGCTGCAACATTGGTGCTTGGCCGTCTTCTTACTGTGTTCTCCTGTGCCGCACTATGGCAGGCCCATTGATGCCCTCAGCAATAGAATgaagcGGTCAGTAACCCATGCCCAGCTAATGCATGATAAGGGTCGGACGCTGCAAGACTTCAAGAGGCGTATGTGGTTGCAGGAGCTGCTGCACGAAGTCCACACTGCAGAAATCCGTGAAGTGCAGCAGAGGGGTGGAGTcagtggtggtggaggtggagcaGTAAATGTGGGTGTTCCTATCGGCGTTGGCATCAGTGTGAGCCCAGGCACTGCTCACCCAAAGCCTGCCGGTGGAACCAAAAACCTGCCAATTATCTATGGCCTAGATGATGAGGAGGGCACCAACCTGCCACAGGAAACCAACAAGTCGCAGCCATACAAAGACAGTGCCATGAAGGTGggaggaaaaaagaagaagaaaggacgtggaggaaaaagaaaagaaggggaaaaaaggaaacggAGAGCCCGTTCACTTAGCTGGGCTTTGGTGGATGAGCTGGGCAGTGGTCTACACCTGGAGTGGCGACCGCTTGTAGGCCAGCGAGGAGTGCTGCACTAGAACACTGTCAGTCTCTGACAACGaTCAAtaaggacattttaaaatggacACCTAAATGCTCATGTTGCAGTACTCACTGTAATAGTGATTGTTTGGAAAATGTTAGGgaaatatttattgtttgtaaATATTCATcatgaataaacaaatatgaAAAGATAATGATAAAACATCATTTCGTGCTCTGTGGGGCAACAGATTTTGATCTTTGTGAATACTTCgctttttctttgttgtttttttctttttgtttgatatatattttttgttaggaCTATGCCAATTATCAGTGTCAGATTTGcagtaatttattttgtttgaatggtgtatttattttgtaaatgtatCAAGGTGCTGCTGACCTTCTATATTTTTGTACCATAATGCActttagatatataaatataaatatatatacaagtaAGTTTGTTAATTGACTTATTTTGTGGTTATTTGAATGAAGAAACCGAAAGACCCCTCCTCATGTTTTAGCCCACTTCTCtcttagtttgtttgtttgtttatttgctcgCTTTGGCGTCCATTTTGgttgtgtttactgtttattatacttttgttttctctttctttgctgCTGACTTAGATGGCCCTTGTGTCATCCACAAATTCAGTCTTAAGAACACTATGTAAATGGTTTCATTTCCCATCAACCCTCCACTCAAGACACTAGATGCATTGTTTGTGCCCTGCCTGTTTGGACCACGACTCAACCTGTACATAAACAACACACATTATTGActgaaatattgttatttggcaCTTGCACTGAGTGAACAATCCTGTATTGAATGGATTAAACATCTGACAGTCATCCTGCA
>XM_007235054.3
GGTCCCACAGCCTCCTCTATAACAGGCTGGAGCACAGCCTCCGGCGGCAGAACTACAGAGACTGCCTTTGCGAGACCACCtggagcacacacacatacactgattGACCTCGCATCACGTTCAGCTTGGTCTTGTTGATTCATAGATTCATTTATGTAtctggagaaaagaaaagaagaaaaaaagggaattcATTCATTATTGGACAAAGTAGCCCATGTTGGAGATCTGATTTGGGTCCAAGTTTGGTGATATCTCTCCTCTTCTAAAGGAGGAAATAGAGGACGGCACACCGGGATTGGCccgagtcttttttttttttttgattgagcTTGTTTGGACTTTGTTAAGCCTGGACACTTTGAAAGAGCCAACAGTCCTGAGTGAGGACAGAAGTAAGAAGTGAGCTGACGCTCTGAGAAACACACATCGCTGTTGGGAGAACACTGAGCAGAAGGATGTTGTGTTCAAGGAGGCTGCTGCAACATTGGTGCTTGGCCGTCTTCTTACTGTGTTCTCCTGTGCCGCACTATGGCAGGCCCATTGATGCCCTCAGCAATAGAATgaagcGGTCAGTAACCCATGCCCAGCTAATGCATGATAAGGGTCGGACGCTGCAAGACTTCAAGAGGCGTATGTGGTTGCAGGAGCTGCTGCACGAAGTCCACACTGCAGAAATCCGTGAAGTGCAGCAGAGGGGTGGAGTcagtggtggtggaggtggagcaGTAAATGTGGGTGTTCCTATCGGCGTTGGCATCAGTGTGAGCCCAGGCACTGCTCACCCAAAGCCTGCCGGTGGAACCAAAAACCTGCCAATTATCTATGGCCTAGATGATGAGGAGGGCACCAACCTGCCACAGGAAACCAACAAGTCGCAGCCATACAAAGACAGTGCCATGAAGGTGggaggaaaaaagaagaagaaaggacgtggaggaaaaagaaaagaaggggaaaaaaggaaacggAGAGCCCGTTCACTTAGCTGGGCTTTGGTGGATGAGCTGGGCAGTGGTCTACACCTGGAGTGGCGACCGCTTGTAGGCCAGCGAGGAGTGCTGCACTAGAACACTGTCAGTCTCTGACAACGaTCAAtaaggacattttaaaatggacACCTAAATGCTCATGTTGCAGTACTCACTGTAATAGTGATTGTTTGGAAAATGTTAGGgaaatatttattgtttgtaaATATTCATcatgaataaacaaatatgaAAAGATAATGATAAAACATCATTTCGTGCTCTGTGGGGCAACAGATTTTGATCTTTGTGAATACTTCgctttttctttgttgtttttttctttttgtttgatatatattttttgttaggaCTATGCCAATTATCAGTGTCAGATTTGcagtaatttattttgtttgaatggtgtatttattttgtaaatgtatCAAGGTGCTGCTGACCTTCTATATTTTTGTACCATAATGCActttagatatataaatataaatatatatacaagtaAGTTTGTTAATTGACTTATTTTGTGGTTATTTGAATGAAGAAACCGAAAGACCCCTCCTCATGTTTTAGCCCACTTCTCtcttagtttgtttgtttgtttatttgctcgCTTTGGCGTCCATTTTGgttgtgtttactgtttattatacttttgttttctctttctttgctgCTGACTTAGATGGCCCTTGTGTCATCCACAAATTCAGTCTTAAGAACACTATGTAAATGGTTTCATTTCCCATCAACCCTCCACTCAAGACACTAGATGCATTGTTTGTGCCCTGCCTGTTTGGACCACGACTCAACCTGTACATAAACAACACACATTATTGActgaaatattgttatttggcaCTTGCACTGAGTGAACAATCCTGTATTGAATGGATTAAACATCTGACAGTCATCCTGCA

Function

NR:

description
parathyroid hormone-related protein-like

GO:

id name namespace
GO:0032330 regulation of chondrocyte differentiation biological_process
GO:0030282 bone mineralization biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K22608 PTHLH, PTHRP; parathyroid hormone-related hormone

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235053.3 False 1686 mRNA 0.42 4 29217916 29233420
XM_007235054.3 True 1909 mRNA 0.43 4 29217916 29226734

Neighbor

gene id symbol gene type direction distance location
xpot xpot,LOC107662216,LOC107658760 coding downstream 18797 29177672 ~ 29199119 (-)
fbxo7 NA coding downstream 66192 29141011 ~ 29151724 (-)
chrm2 chrm2,LOC108427087,LOC107561244,LOC107658987,LOC107707993,LOC107568718,LOC107662193 coding downstream 637231 28483128 ~ 28580685 (-)
psma4 psma4,LOC107680153,LOC107562288,LOC107560014 coding downstream 988584 28223106 ~ 28229332 (-)
ap3b2 ap3b2 coding downstream 1108885 28037860 ~ 28109031 (-)
rpl18a rpl18a coding upstream 197180 29430600 ~ 29434091 (-)
ptdss2 ptdss2 coding upstream 240682 29474102 ~ 29492350 (-)
LOC103033560 LOC108438141 coding upstream 296277 29529697 ~ 29545377 (-)
LOC103033237 ifitm5,LOC103033237,LOC108438128,LOC107559973,LOC107736613,LOC107577508,LOC107680123,LOC108274514 coding upstream 313183 29546603 ~ 29550361 (-)
cat cat,LOC107573156 coding upstream 346900 29580320 ~ 29592259 (-)
G67339 NA non-coding downstream 60722 29155695 ~ 29157194 (-)
G67335 NA non-coding downstream 69942 29146955 ~ 29147974 (-)
G67325 NA non-coding downstream 468704 28748886 ~ 28749212 (-)
G67321 NA non-coding downstream 488745 28726583 ~ 28729171 (-)
G67310 NA non-coding downstream 564412 28652959 ~ 28653504 (-)
G67437 NA non-coding upstream 204816 29438236 ~ 29493059 (-)
G67436 commd9 non-coding upstream 207213 29440633 ~ 29441428 (-)
G67500 NA non-coding upstream 268184 29501604 ~ 29503311 (-)
G67517 NA non-coding upstream 333339 29566759 ~ 29567758 (-)
G67529 NA non-coding upstream 428593 29662013 ~ 29662676 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other downstream 1085128 28121260 ~ 28132788 (-)
tmem258 NA other downstream 1181955 28032701 ~ 28035961 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 3686936 25516515 ~ 25530980 (-)
G66642 NA other downstream 4556014 24660024 ~ 24661902 (-)
G66619 NA other downstream 4709635 24507834 ~ 24508281 (-)
fuk fuk other upstream 209936 29443356 ~ 29467227 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 1364948 30598368 ~ 30600908 (-)
G67755 NA other upstream 1569290 30802710 ~ 30805567 (-)
G67830 NA other upstream 1742457 30975877 ~ 30992883 (-)
tmem60 tmem60 other upstream 1847360 31080780 ~ 31091017 (-)

Expression


Co-expression Network