ptn (ptn,LOC106609498)


Basic Information

Item Value
gene id ptn
gene name ptn,LOC106609498
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 28354062 ~ 28457012 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235066.3
ccctcactcactcacacacagacaccattAGCACAACCCTGTGGCTCAGAGAGCGTGAGTTTACCACAGACAGTGAGAGTGAATGTGTAAGAGAAGGCACAGTGACAAAGAGCCAAAAACACAATCAGCGCAAAAAAGTGGATGAGAAGAGCCGGTCAGGACTGCTTTGAGTGCTGAAACACCAAACTAGAACATGCAGCagcagtgggtgtgtgtggCTGTTCTGGCCCTGTTGGTTGTCACAGTGATGCTGGCAGAAGGCGGGAAGGCGGAAAAGCAAGGTAAGAAGGAGCGTAAGTCGGACTGTGGGGAGTGgcagtggagtgtgtgtgtggcgaaTGAGGGCGACTGCGGCCTGGGCACCAGAGAGGGCACTCGCAGCGGCAATGACTGCAAACAGACCATCAAAACACAGCGCTGCAAAATCCCCTGCAACTGGAAGAAGCAGTTCGGAGGTGAGTGTAAGTATGACTTCCAGGCGTGGGGCGAGTGTGATGCTGCCACAGGGATGAAGAACCGGACCGGTGTGCTGAAACGTGCCCTCATGGATGCTAACTGCCCCAACACTGTCAGTGCAACCAAACCTTGCGGCAAGACCAAGCAACAGGACTCCCGGAAGCCAAAGCGGGACGGGAAGAAGAAAGAACAAGCCCCGTTGCAGTAGAGCTTCAGGGAGGAGGAAGCCCACCCGAACCCCCTTCCTCACGACTACCGACCGACTACCCCAATCTCTCAGCTCTCAGAGGGAGAAGACGGAGATGGCTGCAGCTGCATGGAGGGAGAGTTAAGAAGAGAAAAACATGTCTTcctctcttatattttttagaaGCTTATTTTTGTGTAGCTCCTTCATAGTTTTCATGTGTAGaccttttaaataataaatatataatcatgAATACAAGCTCCTACTAAATCCTGCATACTCAACAGATACTGAACTGCCCTTTAACACTTGGATGGATGGAAGTGACCGGTTAAAGGTGTGTGGTAAAAACAGTGTCTTGTTTTAaagttgattagttgatattTAGATAGTTGGCCTCTGAGCAGTTGCTTAAGAAAGGCAACAGTGTATAGTTAGACATTAAAAACATCCATACTGTAAGTGTCCCAAAAGTAGAAAGTGTATATTACTTGTGGACGCGCTTTATGGAAATTAGTGATATTACCGCTCCCTGTTACTCTACTCCAGGGAAAATAAAGATTTGCAATCCACCATTTA

Function

symbol description
ptn Enables growth factor activity. Acts upstream of or within nervous system development. Predicted to be located in extracellular region. Is expressed in central nervous system and pharyngeal arch. Human ortholog(s) of this gene implicated in adrenal carcinoma. Orthologous to human PTN (pleiotrophin).

NR:

description
PREDICTED: pleiotrophin isoform X1

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K16642 PTN; pleiotrophin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235066.3 True 1225 mRNA 0.48 5 28354062 28457012

Neighbor

gene id symbol gene type direction distance location
tmem138 tmem138,LOC105904230,LOC107561148,LOC107551428,LOC107655161 coding upstream 322064 28025877 ~ 28031998 (+)
LOC103045890 LOC108432719 coding upstream 372873 27960717 ~ 27981189 (+)
LOC111192885 NA coding upstream 856335 27496795 ~ 27497727 (+)
mdm2 mdm2,LOC107577534,LOC106599688 coding upstream 2235763 26104757 ~ 26118299 (+)
slc35e3 slc35e3,LOC107737854,LOC107710682 coding upstream 2272931 26072585 ~ 26081131 (+)
rtcb rtcb coding downstream 705666 29162678 ~ 29174983 (+)
commd9 commd9 coding downstream 981549 29438561 ~ 29441531 (+)
LOC103033872 NA coding downstream 1043715 29500727 ~ 29503311 (+)
LOC103030285 NA coding downstream 1370467 29827479 ~ 29832721 (+)
LOC103044724 NA coding downstream 1742037 30199049 ~ 30236846 (+)
G67279 NA non-coding upstream 29956 28323721 ~ 28324106 (+)
G67278 NA non-coding upstream 41512 28312287 ~ 28312550 (+)
G67225 psma4,LOC105018690,LOC104929549,LOC107680153,LOC107562288,LOC107560014 non-coding upstream 124557 28223107 ~ 28229505 (+)
G67224 NA non-coding upstream 190737 28162591 ~ 28163325 (+)
G67213 NA non-coding upstream 221273 28126097 ~ 28132789 (+)
G67318 NA non-coding downstream 269571 28726583 ~ 28729171 (+)
G67320 NA non-coding downstream 271208 28728220 ~ 28728707 (+)
G67331 NA non-coding downstream 689381 29146393 ~ 29149675 (+)
LOC111193011 NA non-coding downstream 754763 29211775 ~ 29354073 (+)
G67376 NA non-coding downstream 979306 29436318 ~ 29437357 (+)
oaz2 oaz2,LOC108432726 other upstream 133205 28149260 ~ 28220857 (+)
LOC111192916 NA other upstream 2261943 26080452 ~ 26092119 (+)
cspg4 cspg4 other upstream 3053187 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 3669482 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 3801722 24518622 ~ 24552340 (+)
G67459 NA other downstream 1100124 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 1128964 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 1830523 30287535 ~ 30289624 (+)
G67690 atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 2141589 30598601 ~ 30600595 (+)
G67692 arf5,zgc:77650,LOC105916194,LOC101172462,LOC107387912,LOC105020167,LOC105888566 other downstream 2151363 30608375 ~ 30611978 (+)

Expression


Co-expression Network