slc35e3 (slc35e3,LOC107737854,LOC107710682)


Basic Information

Item Value
gene id slc35e3
gene name slc35e3,LOC107737854,LOC107710682
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 26072585 ~ 26081131 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235706.2
TCAGGCGGCTGCGTCCAGCTGaaagttgtgtgtgtttgagcgcAGTGATACTGAACCGGCTCAGAGTCAGAGCATACAAACCCGAACCCAGGCCGAACCAGAGCCCGAGCCGCGGCTCCAGGCGCGCTGCTGATCACCGGGACCCGCTCACACTCTGACCCAGCCCTCACTCACAACAGAGCCGCAGCAGAACCAGAGCTGAAGCCCCGGagctctgcagcagcagcagcagtagcagcagcagcatggcCGGCTCACTGTTCCACCACAGCCCCATCGCCACCGGTCTGCTGGTCAACCTGCTCTCCTCCATCTGCATCGTCTTCCTCAACAAATGGATCTACCTGCACTACGGCTTCCCCAACATCACCCTCACCCTGGTGCACTTCGTGGTCACCTGGCTGGGGCTGGTCATGTGCCACCAGATGGACATCTTCAGCCCCAAGACCCTCAGACCCACCAAGATCATCCTGCTGGCCCTCAGCTTCTGCGGCTTCGTGGCCTTTACTAACCTGTCCCTCCAGAACAACACCATCGGAACCTACCAGCTGATCAAAGCCATGACCACCCCAGTGATCATCATCATCCAGACCGTCTACTACAGGAAGACCTTCTCCCTCAAGATCAAACTCACACTGGTGCCCATCACTCTGGGGGTGATACTGAACTCGTATTATGATGTGAAGTTTAATTTTTTGGGGATCGTCTTCGCTACGCTGGGAGTGTTTGTCACCTCGCTGTATCAGGTGTGGGTGGGGGCGAAGCAGCATGAGCTGCAGGTGAACTCCATGCAGCTGCTGTATTATCAGGCCCCCATGTCCTCCGCTTTCCTCCTCGTCATCGTCCCGTTCTTCGAACCTATCACTGGAGAGGGGGGCATATTCGGCCCCTGGTCTATACAGGCTGTGGTGATGGTGTTATTGTCGGGGGTTGTTGCATTCCTGGTGAATCTGTCTATATATTGGATCATCGGGAACACGTCTCCAGTCACCTACAACATGTTTGGACACTTTAAGTTCTGCATCACGCTGCTGGGAGGCTACTTCCTGTTCCACGACCCACTCTCTCTGCACCAGGGCCTGGGCATCCTCTGCACCCTCAGCGGCATCCTCGCCTACACACACTTCAAGCTGGCCGAGCAGGAGGAGGGGAAGAGCAGGCTGGCCCAGCGGCCGTAACGCCGCCTGGGATGAGCCGGGGACGCTCTGACCGGCGATGTGCACGAGTTTCAGCAGCGCCTGCTGGACCCAGAGACAAAAACATGGACCAGAACCCAAATACTGGGACGCTTCAGCTGCTGGAAAAACAGTTTACAAgtacaggaggaggaggaggaggttcaGATAGAGAGAGGCTGAAGGTCTGATTACACCTTCAGTAAGAGGTGATTTTACATTTcagaaaatagtttattttgtattaatgaGAATCAAGAATTGAGAAATGTCTGCTTTAAATGTGAAATGGTACACTTTATGTCTGGAAGTATCCAGACACCCCTTCTAAAAAGTATCTTACAGTTTATAAAGTACAATCTCTATAGAAAAGTACTGACCAATAGAATGGAATGCTCTAAATTCTTCAGTCTAAAACTGCGTTTTAGGGACTGTAGGAAAAAGactggaaaaatgtatatttatcttTCTGTTGTTAtatcaacagtaaaaaaatatttatacagatatatatttcaTTGTTGAGAGACGAGATGAATAGATTTATTCATTGTTCATTTTGTCCGGTATTTTTCATACTGTCCCTAAAGTGCCTACATTTCAGAATATACAGGGGTtcgataatgaaactgaaactgaactggtttcaaaccacaataatttattgtcccgacggacagttctggtggaaaca

Function

symbol description
slc35e3 Predicted to enable antiporter activity and nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E3 (solute carrier family 35 member E3).

NR:

description
PREDICTED: solute carrier family 35 member E3 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15285 SLC35E3; solute carrier family 35, member E3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235706.2 True 1869 mRNA 0.50 5 26072585 26081131

Neighbor

gene id symbol gene type direction distance location
nup107 nup107,LOC107710680,LOC107590859 coding upstream 3193 26043247 ~ 26069392 (+)
LOC103027045 magi2 coding upstream 47168 25704277 ~ 26025417 (+)
LOC103026250 gnai1,LOC107590838,LOC108279833,LOC107386448,LOC100706147,LOC107680033,LOC106609493 coding upstream 463437 25577886 ~ 25609148 (+)
ireb2 ireb2 coding upstream 524917 25531046 ~ 25547668 (+)
wdr61 wdr61 coding upstream 557237 25508880 ~ 25515348 (+)
mdm2 mdm2,LOC107577534,LOC106599688 coding downstream 23626 26104757 ~ 26118299 (+)
LOC111192885 NA coding downstream 1415664 27496795 ~ 27497727 (+)
LOC103045890 LOC108432719 coding downstream 1879586 27960717 ~ 27981189 (+)
tmem138 tmem138,LOC105904230,LOC107561148,LOC107551428,LOC107655161 coding downstream 1944746 28025877 ~ 28031998 (+)
ptn ptn,LOC106609498 coding downstream 2272931 28354062 ~ 28457012 (+)
G66844 NA non-coding upstream 1430 26025980 ~ 26071155 (+)
G66854 NA non-coding upstream 301824 25737387 ~ 25770761 (+)
G66851 NA non-coding upstream 356347 25715976 ~ 25716238 (+)
G66842 NA non-coding upstream 383350 25688404 ~ 25689235 (+)
G66837 NA non-coding upstream 439502 25632793 ~ 25633083 (+)
LOC111192883 NA non-coding downstream 11069 26092200 ~ 26093105 (+)
G66982 NA non-coding downstream 72284 26153415 ~ 26153644 (+)
G66987 NA non-coding downstream 116290 26197421 ~ 26198071 (+)
G67028 NA non-coding downstream 375924 26457055 ~ 26461093 (+)
G67059 NA non-coding downstream 715341 26796472 ~ 26797829 (+)
cspg4 cspg4 other upstream 771710 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 1388005 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 1520245 24518622 ~ 24552340 (+)
rpap3 rpap3 other upstream 1689563 24367492 ~ 24383022 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other upstream 2352491 23698152 ~ 23720094 (+)
oaz2 oaz2,LOC108432726 other downstream 2068129 28149260 ~ 28220857 (+)
G67459 NA other downstream 3476005 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 3504845 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 4206404 30287535 ~ 30289624 (+)
G67690 atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 4517470 30598601 ~ 30600595 (+)

Expression


Co-expression Network