LOC103022716


Basic Information

Item Value
gene id LOC103022716
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 570221 ~ 574501 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236110.3
ACTCCAAACAGAAGGAAACGTATAAAAGGTGACCAGACCAGTTAGACCGCTCTACCATTTCGAAAGTGAATTTGAACAGAACACAACACCGCAGTCCAGTGAGAGgctatgtttgtgttttgctacgggttgttttgcactttgtTGTATTCTAGCAGAGTAAAATATTATTCTACTGGATTTAAATGTAGCCCTACACTATGATTTTCATACTGCTGTGTGTGTACTGCAGTGTCCTGGAGACGACAAGTGCTGAGAAACACACGCTGCAGTATTTGTACACACTGCGTTCAGCACTTGAGAATGAGCCAGAGTTTGAGATAACGACAGTGTTTGATGGTCTCATCATCTCTCACTGTAAGAGCTCTAGTTTTAGAGATCAGTCCAGATACGACTGGATCAGTCAGACCTTCACTGATGCAGAGTGGAAGAACAGGGATCTGTTCTGTGAGTCagaatattattttcataagACTCTGAAGAAAAAGATTGAAGGTGTATATAACACAACCAATGgaatcatccagagagagagaagctgtaCTGAAGATGATTCAGTGGTTCTTATGAGTGACAGCTGGGGGGTCAATGGTGAAAATTTTCTAACTCTGGATCCAAAAACTCTGAAGTGGAGTTCTGACTCTCCACTGGCGACACCAGTACAATCAGACTGGAACCAGATGAAGTTCATGACTCCATCATTGAAGGACTTTAAGATGAATCAGTGTAAACCATCTCTGATGAAGCTGAAGATGAAGAAAGAGGAGTACCTAAAAGGAAACCTGCgtcctaaaatatatatttttggcaaGCCTTCTCATGATGGAGACACAGTATCTCTGAGATGTTACGTCAGTCATAAGTATTTATCAGGAGTTCGTGTTCGGCTGACTCTGGATGGAGTGGTAGTGGATAACGTTAACATCTCCAGTCCAGCTCCAAATATGGACGGATCAGTTCAGATTAGACTTGAGACGAAGACTAACATTAAAGAGCCTGACTTCTATCACTGTGTAGTGGATGCAGATAATCTGCATACTTTTACAGCATGGGgTGGCCAGACACTGAACCGAAAACCTGCTCCTCGGATTTATGAAGCATGGATTCCTTTTATCTTGTTGTCAGTCCTTATTGGAATAACGTTGTTTGTGAGAGGGACTTTTAATGGTTGTTTCATCAGTTGTAACAAAGgtaagatttttacattttctcctcaCTCCTCTGTCTCAGACAAATGTTTAGccagtcattttttaaatgtgtgctGTTGATTAATTCTAACCTCACTGTGGTCCTCTTTTACAGTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236110.3 True 1310 mRNA 0.41 5 570221 574501

Neighbor

gene id symbol gene type direction distance location
LOC111192919 NA coding upstream 4911 559026 ~ 565310 (+)
LOC103031583 NA coding upstream 375377 192192 ~ 194844 (+)
braf braf,LOC107725591 coding upstream 391211 148669 ~ 179010 (+)
LOC107197032 NA coding downstream 12192 586693 ~ 590105 (+)
LOC103021355 LOC103021355,LOC108426405,LOC108279735,LOC107757248,LOC107694301,LOC100694258,LOC107590616 coding downstream 39612 614113 ~ 621742 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding downstream 175380 749881 ~ 780797 (+)
LOC111192892 NA coding downstream 234733 809234 ~ 809997 (+)
LOC111192924 NA coding downstream 266536 841037 ~ 844690 (+)
G60910 NA non-coding upstream 99532 455836 ~ 470689 (+)
G60903 NA non-coding upstream 292899 277010 ~ 277322 (+)
G60983 NA non-coding downstream 42273 616774 ~ 623435 (+)
G60996 NA non-coding downstream 166190 740691 ~ 740898 (+)
G61011 NA non-coding downstream 226148 800649 ~ 800870 (+)
G61016 NA non-coding downstream 259486 833987 ~ 835273 (+)
G61023 NA non-coding downstream 267094 841595 ~ 949084 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 11641 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 423447 144189 ~ 146774 (+)
LOC103045537 NA other downstream 25158 599659 ~ 625009 (+)
G61014 NA other downstream 232064 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other downstream 279025 853526 ~ 1043316 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 871134 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 1140316 1714817 ~ 1808930 (+)

Expression


Co-expression Network