cand1 (cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592)


Basic Information

Item Value
gene id cand1
gene name cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3267964 ~ 3292593 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236662.3
CTCTCTCAACTTTGCCCTCTCCGTCTGGAGCCGCAGCTCCTCCCTCTTGCAGAGCGAAGCAGGACCTCCATTCAAACCTCCAAACTCAGGGGGATGCAAGTGTAACTCCGCCGCCCTGCTAGAGCCGCACAGAGACTGCAGAGAGCGTGGAGAACCGGCTTTGTGTCGCAGCGCTGCAGCTACGCGAGAAAGTGGAGGGGGAGGATAACTAGTGATTGTGGCCGCGATACTCACAAGTGGTTGCTACCAGCGAGCTGCTCCAACTGACTGACTGCAAATATGGCGAGCGCCTCATACCACATCTCTAATCTCCTGGAAAAAATGACTTCCAGCGATAAGGATTTCAGGTTCATGGCCACAAATGACTTGATGTCAGAACTGCAGAAAGATTCCATCAAGCTGGATGACGACAGTGAGCGGAAAGTGGTCAAGATGATCCTCAAACTTCTGGAAGACAAAAATGGCGAAGTTCAGAACCTGGCTGTTAAATGTTTGGGACCACTTGTTAGCAAAGTCAAGGAGTATCAAGTTGAAACAATTGTCGACACGCTGTGCACGAACATGCTGTCAGATAAAGAGCAGCTTCGAGATATTTCTAGCATCGGTCTGAAGACAGTGATCGGGGAGCTCCCACCAGCATCCAGCGGCTCTGCCCTTGCTGCCAGCGTGTGCAAAAAGATCACAGGCCGCCTCACGAGTGCTATTGCCAAGCAGGAGGACGTATCCGTGCAGCTCGAAGCCCTGGACATCATGGCTGACATGCTCTGCAGACAAGGGGGCCTGTTGGTGAACTTCCACCCCTCCATCCTGAACTGCCTGCTCCCCCAGCTGACCAGCCCTCGACTGGCTGTGAGGAAGAGGACCATCATCGCTCTAGGTCACCTCGTCATGAGCTGTGGAAATCTCGTCTTCGTGGATCTCATCGAGCACTTACTGTCTGAGCTCTCTCGCAACGACTCCATGTCCACCACTCGCACTTACATCCAGTGCATCGCCGCCATCAGCCGACAGGCCGGCCACAGAATCGGCGAGTATTTGGAGAAGATCATTCCACTGGTGGTGAAATTCTGCAACATTGATGACGACGAACTGAGAGAGTACTGCATACAAGCCTTCGAGTCCTTTGTTAGGAGATGTCCAAAAGAAGTGTACCCTCATGTCCCCACAATAATCAACATCTGCCTGAAGTACTTGACTTATGACCCCAACTACAActatgatgatgaggatgaagatgagAATGCTATGGATGCAGATGGGGTGGATGAGGACTATCAAGGAAGCGATGACGAATACAGTGATGACGATGACATGAGCTGGAAGGTGCGGCGGGCAGCAGCCAAGTGCCTGGACGCTGTGGTGAGCACCCGGCACGAGATGCTACCCGAATTCTACCGCACGGTTTCCCCAGCGCTTATAGCGCGCTTTAAAGAACGAGAGGAGAATGTGAAGGCTGACGTCTTCCACGCCTACCTGTCCCTACTCAAGCAGACAAGGCCAGCCCAGAGCTGGCTCTGTGACCCTGATGCTATGGAGCAGGGAGAAACACCGCTCACAATGCTTCAGAGCCAGGTGCCCATGAtagtgaaagctctgcataaaCAGATGAAGGAGAAGAGTGTGAAGACAAGACAGTGCTGCTTCAACATGCTGACAGAGCTGGTGAACGTGCTGCCTGGGGCTCTGACTCAGCACATCCCCGTGCTCGTCCCAGGAATTATATTCTCTCTAAATGATAAATCAAGCTCCTCCAATTTGAAGATCGATGCCCTGTCCTGTTTATACGTGATTCTCTGCAATCATCAGCCTCAAGTCTTCCATCCCCATGTCCAGGCCTTGGTGCCCCCTGTAGTGGCCTGTGTGGGAGATCCTTTCTACAAGATCACCTCTGAAGCACTTCTAGTCACTCAACAGTTAGTGAAGGTGATCCGTCCTTTGGATCAGACTGACGCCTTTGACGCGTCGCCCTACATCACTGACCTGTTCGCCTGCACCATCAAGCGTCTGAAGGCGGCCGACATCGACCAGGAGGTGAAAGAGCGTGCCATCTCCTGCATGGGTCAGATCATCTGCAACCTGGGAGACAGTCTTGGCACTGACTTGCCAGGGACGCTGCACATCTTTCTTGAGCGACTGAAGAATGAGATCACTCGGCTGACCACAGTGAAGGCACTGACTCTGATCGCTGGCTCCCCACTGAAGATTGATCTGCGACCCATCCTCGGCGAGGCTGTGCCCATCCTGGCCTCCTTCCTCCGCAAGAACCAGCGAGCGCTGAAGCTCAGCACTTTGGCAGCACTGGACATCCTTGTGAAGAACTACAGTGACAGTGTGACGCCAGCCATGATCGACGCTGTACTGGCAGAGCTGCCGCCACTGATCAGCGAGAGCGACATGCACGTCTCGCAGATGGCCATCAGCTTCCTGACCACACTGGCCCGTGTGCACCCTGACTCACTTTCCAAGATCAGTGGCTCTATCTTGGCAGAGCTGATAGCACTGGTGCGCTCGCCGCTGCTACAGGGCGGTGCTCTCAGTGCCATGCTGGAGTTTTTCCAGGCGCTGGTGGCCACCGGCACGGCCAGCCTGGGATATATGGACCTATTGCGGATGCTGACCGGCCCTGTATATGCACAGAGTGCTGCCCTCACCCACAAGCAGTCCTACTACTCTATCGCCAAGTGCGTCGCAGCGCTCACCCGGGCGTGCCCTAAAGAGGGCCCTGCCGTGGTGGGCCAGTTCATCCAAGATGTGAAGAACTCTCGTTCCACTGACTCCATCCGCCTCCTAGCCCTGCTGTCCCTGGGTGAGGTGGGTCATCACGTAGATTTGAGTGGCCAGCCAGAGCTCAAAACGGTCATCCTCGATGCCTTCTCCTCAGCCAGTGAGGAGGTGAAATCAGCTGCCTCGTACGCACTGGGCAGCATCAGCGTTGGTAACCTGCCTGAGTACCTGCCCTTCGTGCTGCAGGAGATTTCAGGCCAGCCCAAGCGTCAGTACCTGCTGCTGCACTCGCTTAAAGAAATCATCAGCTCTGCGTCTGTGGCCGGTCTCAAGCCGTATGTGGAGAGTGTGTGGGCTCTGCTGCTTAAACACTGCGAGTGCACGGAGGAAGGCACCCGCAACGTTGTGGCCGAATGTCTGGGGAAGCTCACCCTTATAGACCCAGAGACGCTACTGCCCAGACTAAAGGGCTATTTGTTATCAGGATCTTCGTATGCCAGAAGCTCGGTAGTTACTGCTGTAAAGTTCACAATTTCAGACCACCCACAGGCAATTGATCCCCTCCTGAAAAACTGCATAGgTGATTTTTTGAAAACGTTGGAAGACCCAGACCTCAATGTGCGAAGGGTTGCTCTCGTTACATTCAACTCTGCTGCCCATAATAAGCCCTCACTTATCCGAGACCTCCTGGACACTGTTCTCCCTCACTTATATAATGAGACTAAAGTGCGCAAAGAGCTGATTAGAGAGGTTGAAATGGGTCCGTTTAAACACACAGTAGACGACGGGCTGGACATCAGGAAGGCTGCGTTTGAGTGTATGTACACCCTTTTAGACAGCTGCCTCGATAGACTTGACATCTTTGAGTTTCTTAACCACGTTGAAGACGGACTTAAAGACCATTACGACATCAAGATGCTGACATTCCTGATGCTAGCCAGACTGTCCACTTTGTGCCCTAGTGCTGTGTTGCAGAGGCTTGACAGACTGGTTGAGCCTCTCAGAGCTACATGCACCACAAagGTAAAGGCAAACTCTGTAAAGCAGGAGTTTGAGAAGCAGGACGAGCTGAAAAGGTCCGCCATGCGGGCAGTAGTGGCCCTGCTGACCATCCCTGAGGCAGAGAAGAGCCCCCTCATGAGTGAATTCCAGTCCCAGATAAGCTCCAACCCCGAGCTGGCTGCCATCTTCGACAGCATCCAGAGGGACTCCTCTTCAGCCAACATGGAGTCTATGGACACCAGTTAAACTGCGCCACCATGCCTGACACCTTCACTTACAACAAAAAGCTGCAAGAAAACCAATTCTGGGGGACCCTTTTATCGTTCCATGCATTGCACTGAATCAAATATTGTAGGAGGAAAAGAAATATCaagaaaagcttaaaaaaaaactgagaaaagtaaaaaaaaaaaaaaaaaatcatgggaaAAAATGAAAGGAAGACGTACATTCTCGTAAGCTTCAGAGCTTATCATGTTCGTTTTTTTCAATAGAGAAGAAATTGCTTTGATTGTTCATCAGTCTTCGTTTTTCTCTCCCCACTCCCAGACCacctcttttgttttctttttttctttttttttccgggTTTAGTTCCAGTTTGATGATTCCAGAGGATCCACAGGTACCTCCACACACAGACTTTTGAGCATTGCTGAATCGAGGCACTTGAACAgatggcataaaaaaaaacagactgcaCGAgcttctccttttcttcttttgttgCGTTACCAGAGGAGAAGAATTGTTCTCTGCATTCTGGACTGCTGAGTTCTATAGGATTGATGGCGATAAATGCTAACATTCAGTCAGTTCAGATGATTTAAGGAccatctttcttttgttttctatgTTACCATATTTCTTACCAGACCAGATTTAATGGCTGTTTTTGTACAATTCGAATGTCATCTTGTGTCCCTCTCATCCCCCGTCTAAATGGTTGGTCGGACCTTGAAAGTTTCGACTGCGTTAGAAATATTCCATTAAAGAAGCGCGGCCGTGTGTCTTGGACAAATGAAACCTGGTTTGTTTACCCCCTTCCATGACCTTAAATGGCAGTTTAACATTCCACCCATTCGCAGATTTACATGGTGTAAACAGCATGTATTAGACATTCAGTGACCTAAAATACACTtggtgtgcgcgtgtgtgtgtaagattttcttttttgtttctttttcttttctttatttttcacctGATGACAGTTCTGTTTGGCTCAACCATATAGAAGTGAAACCTGAATCCAATGTTATGAGAAGTTGCTCTGTATGGACGTGAATTCCACACgtgaataaaaacaataagagTGGAGAATATTCTCTGATCACA

Function

symbol description
cand1 Predicted to be involved in SCF complex assembly and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human CAND1 (cullin associated and neddylation dissociated 1).

NR:

description
PREDICTED: cullin-associated NEDD8-dissociated protein 1

GO: NA

KEGG:

id description
K17263 CAND1, TIP120A; cullin-associated NEDD8-dissociated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236662.3 True 5064 mRNA 0.50 16 3267964 3292593

Neighbor

gene id symbol gene type direction distance location
LOC103029880 NA coding upstream 610470 2653605 ~ 2657494 (+)
wif1 wif1,LOC107757271,LOC107594874,LOC107725640 coding upstream 625860 2614208 ~ 2642104 (+)
lmo3 lmo3,LOC107757261,LOC107550907 coding upstream 943704 2274367 ~ 2324260 (+)
tmem121b cecr6 coding upstream 1262718 2003842 ~ 2005246 (+)
mkrn1 mkrn1,LOC107725576 coding upstream 1266335 1984873 ~ 2001629 (+)
dyrk2 dyrk2,LOC107694272,LOC107757277,LOC107655591 coding downstream 50126 3342719 ~ 3373751 (+)
rap1b rap1b,LOC106576640,LOC107695907 coding downstream 270152 3562745 ~ 3642423 (+)
mcat mcat,LOC107553884,LOC107732994 coding downstream 352724 3645317 ~ 3651651 (+)
cfap54 NA coding downstream 363569 3656162 ~ 3694924 (+)
LOC103031106 LOC108438797 coding downstream 554450 3847043 ~ 3853727 (+)
G61560 NA non-coding upstream 1077 3266308 ~ 3266887 (+)
G61558 NA non-coding upstream 22835 3244857 ~ 3245129 (+)
G61401 NA non-coding upstream 316870 2950681 ~ 2951094 (+)
G61397 NA non-coding upstream 336556 2851175 ~ 2931408 (+)
G61370 NA non-coding upstream 609825 2657918 ~ 2658139 (+)
G61607 NA non-coding downstream 101923 3394516 ~ 3397772 (+)
G61608 NA non-coding downstream 102186 3394779 ~ 3396035 (+)
G61657 rint1 non-coding downstream 402641 3695234 ~ 3697781 (+)
LOC111192864 NA non-coding downstream 419649 3712242 ~ 3713423 (+)
LOC111192865 NA non-coding downstream 420964 3713557 ~ 3714248 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 1332465 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 1459034 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 1786546 1445635 ~ 1481418 (+)
G61014 NA other upstream 2218908 806565 ~ 1049056 (+)
G61575 NA other downstream 3953 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 2447962 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 2489498 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 2689643 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 3558637 6851230 ~ 6855762 (+)

Expression


Co-expression Network